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Author Details

Timothy Miller
Boston Children's Hospital, Harvard Medical School.
2012
30
12
PMIDPaper TitleJournal TitlePublished Year
36706848DR.BENCH: Diagnostic Reasoning Benchmark for Clinical Natural Language Processing.J Biomed Inform2023
37583489Overview of the Problem List Summarization (ProbSum) 2023 Shared Task on Summarizing Patients' Active Diagnoses and Problems from Electronic Health Record Progress Notes.Proc Conf Assoc Comput Linguist Meet2023
37786810Improving the Transferability of Clinical Note Section Classification Models with BERT and Large Language Model Ensembles.Proc Conf Assoc Comput Linguist Meet2023
37506330Natural Language Processing to Automatically Extract the Presence and Severity of Esophagitis in Notes of Patients Undergoing Radiotherapy.JCO Clin Cancer Inform2023
37780680End-to-end clinical temporal information extraction with multi-head attention.Proc Conf Assoc Comput Linguist Meet2023
37492270Multi-Task Training with In-Domain Language Models for Diagnostic Reasoning.Proc Conf Assoc Comput Linguist Meet2023
37061012Progress Note Understanding - Assessment and Plan Reasoning: Overview of the 2022 N2C2 Track 3 shared task.J Biomed Inform2023
36990288An End-to-End Natural Language Processing System for Automatically Extracting Radiation Therapy Events From Clinical Texts.Int J Radiat Oncol Biol Phys2023
37034815The SMART Text2FHIR Pipeline.medRxiv2023
35923088A scoping review of publicly available language tasks in clinical natural language processing.J Am Med Inform Assoc2022
35939277Hierarchical Annotation for Building A Suite of Clinical Natural Language Processing Tasks: Progress Note Understanding.LREC Int Conf Lang Resour Eval2022
31150777Supervised methods to extract clinical events from cardiology reports in Italian.J Biomed Inform2019
33907350Two-stage Federated Phenotyping and Patient Representation Learning.Proc Conf Assoc Comput Linguist Meet2019
34027520Extracting Adverse Drug Event Information with Minimal Engineering.Proc Conf2019
33137719XAI-Explainable artificial intelligence.Sci Robot2019
31380524Simplified Neural Unsupervised Domain Adaptation.Proc Conf2019
31233140Toward a clinical text encoder: pretraining for clinical natural language processing with applications to substance misuse.J Am Med Inform Assoc2019
31395609Use of Natural Language Processing to Extract Clinical Cancer Phenotypes from Electronic Medical Records.Cancer Res2019
29092954DeepPhe: A Natural Language Processing System for Extracting Cancer Phenotypes from Clinical Records.Cancer Res2017
28438706Towards generalizable entity-centric clinical coreference resolution.J Biomed Inform2017
26521301Multilayered temporal modeling for the clinical domain.J Am Med Inform Assoc2016
25344930Automatic identification of methotrexate-induced liver toxicity in patients with rheumatoid arthritis from the electronic medical record.J Am Med Inform Assoc2015
26958183Semi-supervised Learning for Phenotyping Tasks.AMIA Annu Symp Proc2015
24091648Discovering body site and severity modifiers in clinical texts.J Am Med Inform Assoc2014
29082229Temporal Annotation in the Clinical Domain.Trans Assoc Comput Linguist2014
25393544Negation's not solved: generalizability versus optimizability in clinical natural language processing.PLoS One2014
25334031ClinicalTrials.gov as a data source for semi-automated point-of-care trial eligibility screening.PLoS One2014
23976944Automatic prediction of rheumatoid arthritis disease activity from the electronic medical records.PLoS One2013
24190931Normalization and standardization of electronic health records for high-throughput phenotyping: the SHARPn consortium.J Am Med Inform Assoc2013
22298565A system for coreference resolution for the clinical narrative.J Am Med Inform Assoc2012
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Collaborators

Dmitriy Dligach
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Boston Children's Hospital, Harvard Medical School.
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University of Arizona.
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Harry Hochheiser
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Kenneth D Mandl
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Harold R Solbrig
Johns Hopkins University
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Thomas A Oniki
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Ning Zhuo
University of Chinese Academy of Sciences
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Joshua C Denny
Vanderbilt University
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Piet C de Groen
University of Minnesota
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Susan Rea
Intermountain Medical Center
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Huan Mo
University of Texas MD Anderson Cancer Center
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Vivian S Gainer
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Release 1.2