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Author Details

Michael Nilges
Institut Pasteur
1986
209
66
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36586404Structure and dynamic association of an assembly platform subcomplex of the bacterial type II secretion system.Structure2023
37769028Acinetobacter type VI secretion system comprises a non-canonical membrane complex.PLoS Pathog2023
35172323Bat coronaviruses related to SARS-CoV-2 and infectious for human cells.Nature2022
35482172Secondary structure and <sup>1</sup>H, <sup>15</sup> N &amp; <sup>13</sup>C resonance assignments of the periplasmic domain of OutG, major pseudopilin from Dickeya dadantii type II secretion system.Biomol NMR Assign2022
35798954Author Correction: Bat coronaviruses related to SARS-CoV-2 and infectious for human cells.Nature2022
36144626Enzymatic and Molecular Characterization of Anti-<i>Leishmania</i> Molecules That Differently Target <i>Leishmania</i> and Mammalian eIF4A Proteins, LieIF4A and eIF4A<sub>Mus</sub>.Molecules2022
36139128Building Protein Atomic Models from Cryo-EM Density Maps and Residue Co-Evolution.Biomolecules2022
34908131InDeep: 3D fully convolutional neural networks to assist in silico drug design on protein-protein interactions.Bioinformatics2022
33416858The iPPI-DB initiative: a community-centered database of protein-protein interaction modulators.Bioinformatics2021
34410621<sup>1</sup>H, <sup>15</sup> N and <sup>13</sup>C resonance assignments of the C-terminal domain of PulL, a component of the Klebsiella oxytoca type II secretion system.Biomol NMR Assign2021
34520738Computational and biochemical analysis of type IV pilus dynamics and stability.Structure2021
34150847Automatic Bayesian Weighting for SAXS Data.Front Mol Biosci2021
34359341Host-Pathogen Adhesion as the Basis of Innovative Diagnostics for Emerging Pathogens.Diagnostics (Basel)2021
34372705Inhibiting Type VI Secretion System Activity with a Biomimetic Peptide Designed To Target the Baseplate Wedge Complex.mBio2021
33135048quicksom: Self-Organizing Maps on GPUs for clustering of molecular dynamics trajectories.Bioinformatics2021
32193349Bayesian inference of chromatin structure ensembles from population-averaged contact data.Proc Natl Acad Sci U S A2020
31784891Structure and function of minor pilins of type IV pili.Med Microbiol Immunol2020
31753619Quantitative Structural Interpretation of Protein Crosslinks.Structure2020
32383755ARIAweb: a server for automated NMR structure calculation.Nucleic Acids Res2020
30393052Bayesian Weighing of Electron Cryo-Microscopy Data for Integrative Structural Modeling.Structure2019
31287306<i>mkgridXf</i>: Consistent Identification of Plausible Binding Sites Despite the Elusive Nature of Cavities and Grooves in Protein Dynamics.J Chem Inf Model2019
31124002Dynamics of a type 2 secretion system pseudopilus unraveled by complementary approaches.J Biomol NMR2019
30799888Minimal NMR distance information for rigidity of protein graphs.Discrete Appl Math2019
31056419Structure and Assembly of the Enterohemorrhagic Escherichia coli Type 4 Pilus.Structure2019
30521325Target Engagement and Binding Mode of an Antituberculosis Drug to Its Bacterial Target Deciphered in Whole Living Cells by NMR.Biochemistry2019
29346371Identification of novel leishmanicidal molecules by virtual and biochemical screenings targeting Leishmania eukaryotic translation initiation factor 4A.PLoS Negl Trop Dis2018
30496238Conformational sampling of CpxA: Connecting HAMP motions to the histidine kinase function.PLoS One2018
29385532Sequence-specific DNA binding activity of the cross-brace zinc finger motif of the piggyBac transposase.Nucleic Acids Res2018
29632657Ordering Protein Contact Matrices.Comput Struct Biotechnol J2018
27678152In Silico prediction of the molecular basis of ClTx and AaCTx interaction with matrix metalloproteinase-2 (MMP-2) to inhibit glioma cell invasion.J Biomol Struct Dyn2017
28112735Nicotine reverses hypofrontality in animal models of addiction and schizophrenia.Nat Med2017
28493950SAS profile correlations reveal SAS hierarchical nature and information content.PLoS One2017
28993624Structure of the calcium-dependent type 2 secretion pseudopilus.Nat Microbiol2017
28966015Structural Characterization of Whirlin Reveals an Unexpected and Dynamic Supramodule Conformation of Its PDZ Tandem.Structure2017
27111507Automated structure modeling of large protein assemblies using crosslinks as distance restraints.Nat Methods2016
26351271Improved large-scale prediction of growth inhibition patterns using the NCI60 cancer cell line panel.Bioinformatics2016
28027298Inferential Structure Determination of Chromosomes from Single-Cell Hi-C Data.PLoS Comput Biol2016
27124288Modification in hydrophobic packing of HAMP domain induces a destabilization of the auto-phosphorylation site in the histidine kinase CpxA.Biopolymers2016
27250206Structure of Complement C3(H2O) Revealed By Quantitative Cross-Linking/Mass Spectrometry And Modeling.Mol Cell Proteomics2016
27579990Building Graphs To Describe Dynamics, Kinetics, and Energetics in the d-ALa:d-Lac Ligase VanA.J Chem Inf Model2016
25543048An automatic tool to analyze and cluster macromolecular conformations based on self-organizing maps.Bioinformatics2015
26575778Temperature Accelerated Molecular Dynamics with Soft-Ratcheting Criterion Orients Enhanced Sampling by Low-Resolution Information.J Chem Theory Comput2015
26367394Neisseria meningitidis Type IV Pili Composed of Sequence Invariable Pilins Are Masked by Multisite Glycosylation.PLoS Pathog2015
26095030Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop.Structure2015
26036565NMR Exchange Format: a unified and open standard for representation of NMR restraint data.Nat Struct Mol Biol2015
25888251Identification of binding sites and favorable ligand binding moieties by virtual screening and self-organizing map analysis.BMC Bioinformatics2015
25861734Improved reliability, accuracy and quality in automated NMR structure calculation with ARIA.J Biomol NMR2015
25627244An algorithm to enumerate all possible protein conformations verifying a set of distance constraints.BMC Bioinformatics2015
25424655Principal Component Analysis reveals correlation of cavities evolution and functional motions in proteins.J Mol Graph Model2015
24038133Stabilization of the integrase-DNA complex by Mg2+ ions and prediction of key residues for binding HIV-1 integrase inhibitors.Proteins2014
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Collaborators

Angela M Gronenborn
University of Pittsburgh
Co-authored papers 17
Se??n I O'Donoghue
University of NSW
Co-authored papers 11
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Leibniz-Forschungsinstitut fur Molekulare Pharmakologie
Co-authored papers 9
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Co-authored papers 7
Michael Sattler
Technical University of Munich, Institute of Structural Biology
Co-authored papers 7
Yannick G Spill
CNRS, University of Strasbourg
Co-authored papers 6
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University of California San Francisco
Co-authored papers 5
John L Markley
University of Wisconsin-Madison
Co-authored papers 5
Alexandre M J J Bonvin
Bijvoet Center for Biomolecular Research, Utrecht University
Co-authored papers 5
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Rensselaer Polytechnic Institute
Co-authored papers 5
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The State University of New Jersey
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European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 3
Massimiliano Bonomi
Institut Pasteur, Universite Paris Cite, CNRS UMR 8
Co-authored papers 3
Paul D Adams
Lawrence Berkeley National Laboratory
Co-authored papers 3
John D Westbrook
The State University of New Jersey
Co-authored papers 3
Charles D Schwieters
National Institute of Diabetes and Digestive and Kidney Diseases
Co-authored papers 3
Martin Karplus
Harvard University
Co-authored papers 3
Edward H Egelman
University of Virginia
Co-authored papers 3
Julia Chamot-Rooke
Institut Pasteur, Universite Paris Cite, CNRS UAR4
Co-authored papers 3
Juri Rappsilber
Institute for Biotechnology, Technical University Berlin
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Rebecca C Wade
Center for Molecular Biology (ZMBH), Heidelberg University
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