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Author Details

Christopher S Miller
University of Colorado Denver.
2004
27
20
PMIDPaper TitleJournal TitlePublished Year
38038838A conserved electrostatic membrane-binding surface in synaptotagmin-like proteins revealed using molecular phylogenetic analysis and homology modeling.Protein Sci2024
36857575kb_DRAM: annotation and metabolic profiling of genomes with DRAM in KBase.Bioinformatics2023
37502952A Conserved Electrostatic Membrane-Binding Surface in Synaptotagmin-Like Proteins Revealed Using Molecular Phylogenetic Analysis and Homology Modeling.bioRxiv2023
31796563Uncovering the Diversity and Activity of Methylotrophic Methanogens in Freshwater Wetland Soils.mSystems2019
30060184Complex Evolutionary History of Translation Elongation Factor 2 and Diphthamide Biosynthesis in Archaea and Parabasalids.Genome Biol Evol2018
29146959Methanogenesis in oxygenated soils is a substantial fraction of wetland methane emissions.Nat Commun2017
28217877High-resolution sequencing reveals unexplored archaeal diversity in freshwater wetland soils.Environ Microbiol2017
29257962Microbial Biodiversity: Straight from the Dolphin's Mouth.Curr Biol2017
26973616Fungi Contribute Critical but Spatially Varying Roles in Nitrogen and Carbon Cycling in Acid Mine Drainage.Front Microbiol2016
24674078Disturbed subsurface microbial communities follow equivalent trajectories despite different structural starting points.Environ Microbiol2015
25918833Metagenomic and lipid analyses reveal a diel cycle in a hypersaline microbial ecosystem.ISME J2015
25815185Perturbation and restoration of the fathead minnow gut microbiome after low-level triclosan exposure.Microbiome2015
24468033Microbes in the neonatal intensive care unit resemble those found in the gut of premature infants.Microbiome2014
23190730Biostimulation induces syntrophic interactions that impact C, S and N cycling in a sediment microbial community.ISME J2013
24060129Assembling full-length rRNA genes from short-read metagenomic sequence datasets using EMIRGE.Methods Enzymol2013
23472107Fluctuations in species-level protein expression occur during element and nutrient cycling in the subsurface.PLoS One2013
23405248Short-read assembly of full-length 16S amplicons reveals bacterial diversity in subsurface sediments.PLoS One2013
23019650Fermentation, hydrogen, and sulfur metabolism in multiple uncultivated bacterial phyla.Science2012
23001646Heterotrophic archaea contribute to carbon cycling in low-pH, suboxic biofilm communities.Appl Environ Microbiol2012
21724886Glycoside hydrolase activities of thermophilic bacterial consortia adapted to switchgrass.Appl Environ Microbiol2011
21880595A novel three-unit tRNA splicing endonuclease found in ultrasmall Archaea possesses broad substrate specificity.Nucleic Acids Res2011
21595876EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data.Genome Biol2011
18213365The Sorcerer II Global Ocean Sampling Expedition: metagenomic characterization of viruses within aquatic microbial samples.PLoS One2008
18511466Using inferred residue contacts to distinguish between correct and incorrect protein models.Bioinformatics2008
18636118Host-derived oxidized phospholipids and HDL regulate innate immunity in human leprosy.J Clin Invest2008
17355171The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families.PLoS Biol2007
14681454The Database of Interacting Proteins: 2004 update.Nucleic Acids Res2004
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Collaborators

David Eisenberg
university of california los angeles
Co-authored papers 4
Karla B Heidelberg
The University of Southern California
Co-authored papers 3
Steven W Singer
Co-authored papers 3
Manesh Shah
University of Tennessee Knoxville
Co-authored papers 2
Shannon J Williamson
J. Craig Venter Institute
Co-authored papers 2
Mary S Lipton
Pacific Northwest National Laboratory
Co-authored papers 2
Shibu Yooseph
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Co-authored papers 2
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Illumina Inc.
Co-authored papers 2
Douglas B Rusch
Center for Genomics and Bioinformatics, Indiana University
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J C Venter
The J. Craig Venter Institute
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Marvin Frazier
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University of Cincinnati College of Medicine
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Pacific Northwest National Laboratory
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Cynthia Andrews-Pfannkoch
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Anna Lipzen
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Susan T Mashiyama
University of California san francisco
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Vineet Bafna
University of California San Diego
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Steven E Brenner
University of California berkeley
Co-authored papers 1
Weizhong Li
J. Craig Venter Institute
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James U Bowie
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Robert L Strausberg
Ludwig Institute for Cancer Research
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Elisha M Wood-Charlson
Lawrence Berkeley National Laboratory
Co-authored papers 1
Janaka N Edirisinghe
Computation Institute, University of Chicago
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