Author details

Full Name

Andrey A Mironov

Affiliation

Lomonosov Moscow State University

ORCID

Career Start Year

1979

Papers

148

H Index

Expertise

CM4AI Collaborator

Nathan Sheffield (CM4AI)

PMID	Paper Title	Journal Title	Published Year
36798258	Foreign RNA spike-ins enable accurate allele-specific expression analysis at scale.	bioRxiv	2023
36912101	Tissue-specific regulation of gene expression via unproductive splicing.	Nucleic Acids Res	2023
37387154	Foreign RNA spike-ins enable accurate allele-specific expression analysis at scale.	Bioinformatics	2023
36798258	Foreign RNA spike-ins enable accurate allele-specific expression analysis at scale.	bioRxiv	2023
37221043	RNA-Chrom: a manually curated analytical database of RNA-chromatin interactome.	Database (Oxford)	2023
37221043	RNA-Chrom: a manually curated analytical database of RNA-chromatin interactome.	Database (Oxford)	2023
37387154	Foreign RNA spike-ins enable accurate allele-specific expression analysis at scale.	Bioinformatics	2023
36912101	Tissue-specific regulation of gene expression via unproductive splicing.	Nucleic Acids Res	2023
36123626	ortho2align: a sensitive approach for searching for orthologues of novel lncRNAs.	BMC Bioinformatics	2022
36230586	Investigation of the Role of PUFA Metabolism in Breast Cancer Using a Rank-Based Random Forest Algorithm.	Cancers (Basel)	2022
36275462	Ectopic expression of HIV-1 Tat modifies gene expression in cultured B cells: implications for the development of B-cell lymphomas in HIV-1-infected patients.	PeerJ	2022
35610035	OrthoQuantum: visualizing evolutionary repertoire of eukaryotic proteins.	Nucleic Acids Res	2022
36123626	ortho2align: a sensitive approach for searching for orthologues of novel lncRNAs.	BMC Bioinformatics	2022
35610035	OrthoQuantum: visualizing evolutionary repertoire of eukaryotic proteins.	Nucleic Acids Res	2022
36275462	Ectopic expression of HIV-1 Tat modifies gene expression in cultured B cells: implications for the development of B-cell lymphomas in HIV-1-infected patients.	PeerJ	2022
36230586	Investigation of the Role of PUFA Metabolism in Breast Cancer Using a Rank-Based Random Forest Algorithm.	Cancers (Basel)	2022
34099647	Replicate sequencing libraries are important for quantification of allelic imbalance.	Nat Commun	2021
34099647	Replicate sequencing libraries are important for quantification of allelic imbalance.	Nat Commun	2021
32479626	Studying RNA-DNA interactome by Red-C identifies noncoding RNAs associated with various chromatin types and reveals transcription dynamics.	Nucleic Acids Res	2020
32345340	Origin of the nuclear proteome on the basis of pre-existing nuclear localization signals in prokaryotic proteins.	Biol Direct	2020
32479626	Studying RNA-DNA interactome by Red-C identifies noncoding RNAs associated with various chromatin types and reveals transcription dynamics.	Nucleic Acids Res	2020
32864204	Cumulative contact frequency of a chromatin region is an intrinsic property linked to its function.	PeerJ	2020
32864204	Cumulative contact frequency of a chromatin region is an intrinsic property linked to its function.	PeerJ	2020
32345340	Origin of the nuclear proteome on the basis of pre-existing nuclear localization signals in prokaryotic proteins.	Biol Direct	2020
29476477	FACS Isolation of Viable Cells in Different Cell Cycle Stages from Asynchronous Culture for RNA Sequencing.	Methods Mol Biol	2018
29873782	Coloc-stats: a unified web interface to perform colocalization analysis of genomic features.	Nucleic Acids Res	2018
29476477	FACS Isolation of Viable Cells in Different Cell Cycle Stages from Asynchronous Culture for RNA Sequencing.	Methods Mol Biol	2018
29873782	Coloc-stats: a unified web interface to perform colocalization analysis of genomic features.	Nucleic Acids Res	2018
27899632	Application of sorting and next generation sequencing to study 5Î¿-UTR influence on translation efficiency in Escherichia coli.	Nucleic Acids Res	2017
28452371	Differential processing of small RNAs during endoplasmic reticulum stress.	Sci Rep	2017
29028265	StereoGene: rapid estimation of genome-wide correlation of continuous or interval feature data.	Bioinformatics	2017
27899632	Application of sorting and next generation sequencing to study 5Î¿-UTR influence on translation efficiency in Escherichia coli.	Nucleic Acids Res	2017
28251962	[Chromatin and Polycomb: Biology and bioinformatics].	Mol Biol (Mosk)	2017
28201729	Compensatory Evolution of Intrinsic Transcription Terminators in Bacillus Cereus.	Genome Biol Evol	2017
28201729	Compensatory Evolution of Intrinsic Transcription Terminators in Bacillus Cereus.	Genome Biol Evol	2017
28251962	[Chromatin and Polycomb: Biology and bioinformatics].	Mol Biol (Mosk)	2017
28452371	Differential processing of small RNAs during endoplasmic reticulum stress.	Sci Rep	2017
29028265	StereoGene: rapid estimation of genome-wide correlation of continuous or interval feature data.	Bioinformatics	2017
27028813	[piRNAs: Biology and Bioinformatics].	Mol Biol (Mosk)	2016
26732206	Probing-directed identification of novel structured RNAs.	RNA Biol	2016
27028813	[piRNAs: Biology and Bioinformatics].	Mol Biol (Mosk)	2016
27690309	Identification of Position-Specific Correlations between DNA-Binding Domains and Their Binding Sites. Application to the MerR Family of Transcription Factors.	PLoS One	2016
27690309	Identification of Position-Specific Correlations between DNA-Binding Domains and Their Binding Sites. Application to the MerR Family of Transcription Factors.	PLoS One	2016
26732206	Probing-directed identification of novel structured RNAs.	RNA Biol	2016
25961318	Inter-chromosomal contact networks provide insights into Mammalian chromatin organization.	PLoS One	2015
25961318	Inter-chromosomal contact networks provide insights into Mammalian chromatin organization.	PLoS One	2015
26642327	Correlated Evolution of Nucleotide Positions within Splice Sites in Mammals.	PLoS One	2015
26591601	[Evolution of non-Coding RNAs in Drosophila melanogaster Genome].	Biofizika	2015
26591601	[Evolution of non-Coding RNAs in Drosophila melanogaster Genome].	Biofizika	2015
26642327	Correlated Evolution of Nucleotide Positions within Splice Sites in Mammals.	PLoS One	2015

1 - 50 of 296

Nozomu Yachie

The University of British Columbia

Career Start Year 2006

Number of shared co-authors 1

Gang Fang

Icahn School of Medicine at Mount Sinai

Career Start Year 2005

Number of shared co-authors 4

Ying Xu

The China-Japan Union Hospital, Jilin University

Career Start Year 2002

Number of shared co-authors 0

Jun Yu

Beijing Institute of Genomics, Chinese Academy of Sciences

Career Start Year 2001

Number of shared co-authors 0

Shuichi Kawashima

Database Center for Life Science, Joint Support-Center for Data Science Research

Career Start Year 1999

Number of shared co-authors 0

Ian Korf

University of California davis

Career Start Year 1998

Number of shared co-authors 2

Stefano Toppo

University of Padova

Career Start Year 1996

Number of shared co-authors 0

Steven E Brenner

University of California berkeley

Career Start Year 1994

Number of shared co-authors 8

Finn Drabl??s

NTNU - Norwegian University of Science and Technology

Career Start Year 1994

Number of shared co-authors 9

Terry Gaasterland

Scripps Institution of Oceanography, University of California San Diego

Career Start Year 1994

Number of shared co-authors 1

Hideo Matsuda

Osaka University

Career Start Year 1994

Number of shared co-authors 2

Simon Kasif

Boston University

Career Start Year 1993

Number of shared co-authors 3

Valentin A Ilyin

Carnegie Mellon University Qatar

Career Start Year 1992

Number of shared co-authors 0

Martijn A Huynen

Radboud University Medical Centre Nijmegen

Career Start Year 1992

Number of shared co-authors 2

Steven L Salzberg

Center for Computational Biology, Johns Hopkins University

Career Start Year 1992

Number of shared co-authors 6

Miguel A Andrade-Navarro

Institute of Organismic and Molecular Evolution, Johannes Gutenberg University

Career Start Year 1991

Number of shared co-authors 1

Jaap Heringa

VU University Amsterdam

Career Start Year 1991

Number of shared co-authors 0

Arcady Mushegian

National Science Foundation

Career Start Year 1991

Number of shared co-authors 1

Asaf Salamov

US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory

Career Start Year 1991

Number of shared co-authors 2

Peer Bork

University of Wurzburg

Career Start Year 1989

Number of shared co-authors 6

Rintaro Saito

Institute for Advanced Biosciences, Keio University

Career Start Year 1988

Number of shared co-authors 0

Alfonso Valencia

Josep Carreras Leukaemia Research Institute (IJC)

Career Start Year 1986

Number of shared co-authors 5

Liisa Holm

Institute of Biotechnology, University of Helsinki

Career Start Year 1986

Number of shared co-authors 0

Luciano Milanesi

Institute of Biomedical Technologies - National Research Council of Italy

Career Start Year 1982

Number of shared co-authors 0

Gary D Stormo

Washington University in St. Louis

Career Start Year 1981

Number of shared co-authors 4

Marie-Dominique Devignes

Universite de Lorraine, CNRS

Career Start Year 1979

Number of shared co-authors 2

Chris Sander

Broad Institute of MIT and Harvard

Career Start Year 1979

Number of shared co-authors 3

Michael S Waterman

Biocomplexity Institute and Initiative

Career Start Year 1977

Number of shared co-authors 1

William R Pearson

University of Virginia

Career Start Year 1974

Number of shared co-authors 0

Antoine Danchin

University of Hong Kong

Career Start Year 1969

Number of shared co-authors 1

row(s) 1 - 30 of 30

Alexander V Favorov

Johns Hopkins School of Medicine

Co-authored papers 14

Dmitry A Rodionov

Sanford Burnham Prebys Medical Discovery Institute

Co-authored papers 13

Pavel S Novichkov

Lawrence Berkeley National Laboratory

Co-authored papers 9

Pavel A Pevzner

University of California

Co-authored papers 8

Vsevolod J Makeev

Vavilov Institute of General Genetics, Russian Academy of Sciences

Co-authored papers 7

Ramil N Nurtdinov

The Barcelona Institute for Science and Technology

Co-authored papers 7

Dmitrij Frishman

Co-authored papers 6

Roman A Sutormin

Lawrence Berkeley National Laboratory

Co-authored papers 4

Dmitri D Pervouchine

Co-authored papers 4

Mark Borodovsky

Georgia Institute of Technology

Co-authored papers 2

Sarah J Wheelan

National Human Genome Research Institute, National Institutes of Health

Co-authored papers 2

Inna Dubchak

Lawrence Berkeley National Laboratory

Co-authored papers 2

Adam P Arkin

Lawrence Berkeley National Laboratory

Co-authored papers 2

Ryan M Layer

Boulder and BioFrontiers Institute, University of Colorado Boulder

Co-authored papers 1

Aaron R Quinlan

University of Utah

Co-authored papers 1

Shamil R Sunyaev

Harvard Medical School

Co-authored papers 1

Sveinung Gundersen

Center for Bioinformatics, University of Oslo

Co-authored papers 1

Jacques van Helden

Co-authored papers 1

Gennady G Fedonin

Co-authored papers 1

Saurabh Sinha

Georgia Institute of Technology

Co-authored papers 1

Gert Thijs

Co-authored papers 1

Ludmila Danilova

Bloomberg-Kimmel Immunotherapy Institute, Johns Hopkins University School of Medicine

Co-authored papers 1

Yulia A Medvedeva

Research Center of Biotechnology RAS, Russian Academy of Sciences

Co-authored papers 1

William James Kent

Co-authored papers 1

Giulio Pavesi

Co-authored papers 1

Denis A Reshetov

Co-authored papers 1

Martin C Frith

Artificial Intelligence Research Center, University of Tokyo

Co-authored papers 1

William Stafford Noble

Co-authored papers 1

Eleazar Eskin

Co-authored papers 1

Graziano Pesole

Co-authored papers 1

1 - 30

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