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Author Details

Ramona L Walls
Critical Path Institute
2005
42
20
PMIDPaper TitleJournal TitlePublished Year
37131052The future of rare disease drug development: the rare disease cures accelerator data analytics platform (RDCA-DAP).J Pharmacokinet Pharmacodyn2023
36208225Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies.Database (Oxford)2022
37632753The founding charter of the Omic Biodiversity Observation Network (Omic BON).Gigascience2022
37938691MIxS-SA: a MIxS extension defining the minimum information standard for sequence data from symbiont-associated micro-organisms.ISME Commun2022
35811979Establishing a Common Nutritional Vocabulary - From Food Production to Diet.Front Nutr2022
36212022A solution to the challenges of interdisciplinary aggregation and use of specimen-level trait data.iScience2022
33983959Ten simple rules to cultivate transdisciplinary collaboration in data science.PLoS Comput Biol2021
34789871Reporting guidelines for human microbiome research: the STORMS checklist.Nat Med2021
34697637OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies.Database (Oxford)2021
33960385Internet of Samples (iSamples): Toward an interdisciplinary cyberinfrastructure for material samples.Gigascience2021
32152536Publisher Correction: Open Science principles for accelerating trait-based science across the Tree of Life.Nat Ecol Evol2020
32051026Maize genomes to fields (G2F): 2014-2017 field seasons: genotype, phenotype, climatic, soil, and inbred ear image datasets.BMC Res Notes2020
32066887Open Science principles for accelerating trait-based science across the Tree of Life.Nat Ecol Evol2020
33232313Transforming the study of organisms: Phenomic data models and knowledge bases.PLoS Comput Biol2020
30843297Climate change, extinction, and Sky Island biogeography in a montane lizard.Mol Ecol2019
31214208The Plant Ontology Facilitates Comparisons of Plant Development Stages Across Species.Front Plant Sci2019
30918448Developing a vocabulary and ontology for modeling insect natural history data: example data, use cases, and competency questions.Biodivers Data J2019
30937223Integrating herbarium specimen observations into global phenology data systems.Appl Plant Sci2019
29253296Crowds Replicate Performance of Scientific Experts Scoring Phylogenetic Matrices of Phenotypes.Syst Biol2018
30239679AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture.Database (Oxford)2018
29986751Maize Genomes to Fields: 2014 and 2015 field season genotype, phenotype, environment, and inbred ear image datasets.BMC Res Notes2018
30224814Towards global data products of Essential Biodiversity Variables on species traits.Nat Ecol Evol2018
30532623Modifier Ontologies for frequency, certainty, degree, and coverage phenotype modifier.Biodivers Data J2018
29765382The Plant Phenology Ontology: A New Informatics Resource for Large-Scale Integration of Plant Phenology Data.Front Plant Sci2018
29732253Digitization protocol for scoring reproductive phenology from herbarium specimens of seed plants.Appl Plant Sci2018
27076900MicrO: an ontology of phenotypic and metabolic characters, assays, and culture media found in prokaryotic taxonomic descriptions.J Biomed Semantics2016
28369359Plant specimen contextual data consensus.Gigascience2016
27664130The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation.J Biomed Semantics2016
25562316Finding our way through phenotypes.PLoS Biol2015
26713234Emerging semantics to link phenotype and environment.PeerJ2015
25901117Community next steps for making globally unique identifiers work for biocollections data.Zookeys2015
25632945Modeling a microbial community and biodiversity assay with OBO Foundry ontologies: the interoperability gains of a modular approach.Database (Oxford)2015
25774204An ontology approach to comparative phenomics in plants.Plant Methods2015
24595056Semantics in support of biodiversity knowledge discovery: an introduction to the biological collections ontology and related ontologies.PLoS One2014
25140222Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology.J Biomed Semantics2014
23220694The plant ontology as a tool for comparative plant anatomy and genomic analyses.Plant Cell Physiol2013
23827969Next-generation phenomics for the Tree of Life.PLoS Curr2013
23991264Clarifying concepts and terms in biodiversity informatics.Stand Genomic Sci2013
22847540Ontologies as integrative tools for plant science.Am J Bot2012
21613113Angiosperm leaf vein patterns are linked to leaf functions in a global-scale data set.Am J Bot2011
21632416Plasticity in salt tolerance traits allows for invasion of novel habitat by Japanese knotweed s. l. (Fallopia japonica and F.xbohemica, Polygonaceae).Am J Bot2008
16195843Fertility, root reserves and the cost of inducible defenses in the perennial plant Solanum carolinense.J Chem Ecol2005
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Collaborators

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Renaissance Computing Institute, University of North Carolina
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University of Maryland School of Medicine, Institute for Genome Sciences
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University of Oslo
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European Bioinformatics Institute
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