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Author Details

Alexander S Rose
University of California San Diego
2009
33
18
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37194693Mol* Volumes and Segmentations: visualization and interpretation of cell imaging data alongside macromolecular structure data and biological annotations.Nucleic Acids Res2023
35639717MDsrv: visual sharing and analysis of molecular dynamics simulations.Nucleic Acids Res2022
33211854RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences.Nucleic Acids Res2021
33956157Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures.Nucleic Acids Res2021
33404533High-performance macromolecular data delivery and visualization for the web. Corrigendum.Acta Crystallogr D Struct Biol2021
33186584RCSB Protein Data Bank: Architectural Advances Towards Integrated Searching and Efficient Access to Macromolecular Structure Data from the PDB Archive.J Mol Biol2021
33263322High-performance macromolecular data delivery and visualization for the web.Acta Crystallogr D Struct Biol2020
33284792Real-time structural motif searching in proteins using an inverted index strategy.PLoS Comput Biol2020
33075050BinaryCIF and CIFTools-Lightweight, efficient and extensible macromolecular data management.PLoS Comput Biol2020
30357411RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy.Nucleic Acids Res2019
31301982Bringing Molecular Dynamics Simulation Data into View.Trends Biochem Sci2019
31564470Molecular Graphics: Bridging Structural Biologists and Computer Scientists.Structure2019
29236954NGLview-interactive molecular graphics for Jupyter notebooks.Bioinformatics2018
29850778NGL viewer: web-based molecular graphics for large complexes.Bioinformatics2018
29363577The arrestin-1 finger loop interacts with two distinct conformations of active rhodopsin.J Biol Chem2018
29788317FragFit: a web-application for interactive modeling of protein segments into cryo-EM density maps.Nucleic Acids Res2018
27794042The RCSB protein data bank: integrative view of protein, gene and 3D structural information.Nucleic Acids Res2017
28362865Towards an efficient compression of 3D coordinates of macromolecular structures.PLoS One2017
29132296A fragment based method for modeling of protein segments into cryo-EM density maps.BMC Bioinformatics2017
29190271MDsrv: viewing and sharing molecular dynamics simulations on the web.Nat Methods2017
28575181DeepSite: protein-binding site predictor using 3D-convolutional neural networks.Bioinformatics2017
28574982MMTF-An efficient file format for the transmission, visualization, and analysis of macromolecular structures.PLoS Comput Biol2017
27105847SL2: an interactive webtool for modeling of missing segments in proteins.Nucleic Acids Res2016
25925569NGL Viewer: a web application for molecular visualization.Nucleic Acids Res2015
26606751Role of Structural Dynamics at the Receptor G Protein Interface for Signal Transduction.PLoS One2015
26105054The Activation Pathway of Human Rhodopsin in Comparison to Bovine Rhodopsin.J Biol Chem2015
24194596MP:PD--a data base of internal packing densities, internal packing defects and internal waters of helical membrane proteins.Nucleic Acids Res2014
25205354Crystal structure of a common GPCR-binding interface for G protein and arrestin.Nat Commun2014
25046433Position of transmembrane helix 6 determines receptor G protein coupling specificity.J Am Chem Soc2014
23161674Voronoia4RNA--a database of atomic packing densities of RNA structures and their complexes.Nucleic Acids Res2013
23883288Precision vs flexibility in GPCR signaling.J Am Chem Soc2013
20484376MPlot--a server to analyze and visualize tertiary structure contacts and geometrical features of helical membrane proteins.Nucleic Acids Res2010
19465378RHYTHM--a server to predict the orientation of transmembrane helices in channels and membrane-coils.Nucleic Acids Res2009
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Collaborators

The State University of New Jersey
Co-authored papers 9
University of California San Diego
Co-authored papers 7
University of California
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University of California
Co-authored papers 5
The State University of New Jersey
Co-authored papers 4
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Co-authored papers 4
University of California San Diego
Co-authored papers 4
The State University of New Jersey
Co-authored papers 3
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Co-authored papers 3
The State University of New Jersey
Co-authored papers 3
University of California
Co-authored papers 3
The State University of New Jersey
Co-authored papers 3
The State University of New Jersey
Co-authored papers 3
The State University of New Jersey
Co-authored papers 3
The State University of New Jersey
Co-authored papers 3
The State University of New Jersey
Co-authored papers 3
The State University of New Jersey
Co-authored papers 3
The State University of New Jersey
Co-authored papers 3
University of California San Diego
Co-authored papers 3
University of California
Co-authored papers 3
University of Naples Federico II
Co-authored papers 3
The State University of New Jersey
Co-authored papers 3
The State University of New Jersey
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The State University of New Jersey
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The State University of New Jersey
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