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Author Details

Genji Kurisu
Institute for Protein Research, Osaka University
1993
126
32
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36828268ModelCIF: An Extension of PDBx/mmCIF Data Representation for Computed Structure Models.J Mol Biol2023
37561405Announcing the launch of Protein Data Bank China as an Associate Member of the Worldwide Protein Data Bank Partnership.Acta Crystallogr D Struct Biol2023
37180033Soluble domains of cytochrome <i>c</i>-556 and Rieske iron-sulfur protein from <i>Chlorobaculum tepidu</i>m: Crystal structures and interaction analysis.Curr Res Struct Biol2023
37234853Regulation of motor activity of ciliary outer-arm dynein by the light chain 1; Implications from the structure of the light chain bound to the microtubule-binding domain of the heavy chain.Biophys Physicobiol2023
37035687An artificial metallolyase with pliable 2-His-1-carboxylate facial triad for stereoselective Michael addition.Chem Sci2023
37270022Three structures of PSI-LHCI from Chlamydomonas reinhardtii suggest a resting state re-activated by ferredoxin.Biochim Biophys Acta Bioenerg2023
37400274Crystal structure of the stalk region of axonemal inner-arm dynein-d reveals unique features in the coiled-coil and microtubule-binding domain.FEBS Lett2023
36478084Biological Magnetic Resonance Data Bank.Nucleic Acids Res2023
34661240Forty years of the structure of plant-type ferredoxin.J Biochem2022
35460671PDBx/mmCIF Ecosystem: Foundational Semantic Tools for Structural Biology.J Mol Biol2022
35861182Structures of multisubunit membrane complexes with the CRYO ARM 200.Microscopy (Oxf)2022
37082593Structural insights into blue-green light utilization by marine green algal light harvesting complex II at 2.78 ÿ.BBA Adv2022
36532871History of Protein Data Bank Japan: standing at the beginning of the age of structural genomics.Biophys Rev2022
36555561Effects of Active-Center Reduction of Plant-Type Ferredoxin on Its Structure and Dynamics: Computational Analysis Using Molecular Dynamics Simulations.Int J Mol Sci2022
36174533Structural insights into the substrate specificity of IMP-6 and IMP-1 metallo-β-lactamases.J Biochem2022
36173179Crystal structure and reaction mechanism of a bacterial Mg-dechelatase homolog from the Chloroflexi Anaerolineae.Protein Sci2022
36097054Structure of cyanobacterial photosystem I complexed with ferredoxin at 1.97⿿ÿ resolution.Commun Biol2022
35291800Energy transfer fluctuation observed by single-molecule spectroscopy of red-shifted bacteriochlorophyll in the homodimeric photosynthetic reaction center.J Chem Phys2022
34902329Isothermal titration calorimetry of membrane protein interactions: FNR and the cytochrome b<sub>6</sub>f complex.Biophys J2022
34989928LcaR: a regulatory switch from Pseudomonas aeruginosa for bioengineering alkane degrading bacteria.Biodegradation2022
34865074Fifty years of Protein Data Bank in the Journal of Biochemistry.J Biochem2022
34664328Protein Data Bank Japan: Celebrating our 20th anniversary during a global pandemic as the Asian hub of three dimensional macromolecular structural data.Protein Sci2022
32875920Dialysis-related amyloidosis associated with a novel β<sub>2</sub>-microglobulin variant.Amyloid2021
33686186Cryo-EM structure of a functional monomeric Photosystem I from Thermosynechococcus elongatus reveals red chlorophyll cluster.Commun Biol2021
33839679Crystal structure of higher plant heme oxygenase-1 and its mechanism of interaction with ferredoxin.J Biol Chem2021
33657417Enhanced validation of small-molecule ligands and carbohydrates in the Protein Data Bank.Structure2021
33978738Modernized uniform representation of carbohydrate molecules in the Protein Data Bank.Glycobiology2021
33950382The Protein Data Bank Archive.Methods Mol Biol2021
33949973Crystallographic analysis and phasing of iron-assimilating protein 1 (FEA1) from Chlamydomonas reinhardtii.Acta Crystallogr F Struct Biol Commun2021
32007556Continuum mechanical parameterisation of cytoplasmic dynein from atomistic simulation.Methods2021
32352789Cryogenic Single-Molecule Spectroscopy of the Primary Electron Acceptor in the Photosynthetic Reaction Center.J Phys Chem Lett2020
32026396The Biological Structure Model Archive (BSM-Arc): an archive for in silico models and simulations.Biophys Rev2020
31838096Kinetic and structural insight into a role of the re-face Tyr328 residue of the homodimer type ferredoxin-NADP<sup>+</sup> oxidoreductase from Rhodopseudomonas palustris in the reaction with NADP<sup>+</sup>/NADPH.Biochim Biophys Acta Bioenerg2020
31776187Calcium sensing via EF-hand 4 enables thioredoxin activity in the sensor-responder protein calredoxin in the green alga <i>Chlamydomonas reinhardtii</i>.J Biol Chem2020
32073197Cupin Variants as a Macromolecular Ligand Library for Stereoselective Michael Addition of Nitroalkanes.Angew Chem Int Ed Engl2020
32014992The complex of outer-arm dynein light chain-1 and the microtubule-binding domain of the γ heavy chain shows how axonemal dynein tunes ciliary beating.J Biol Chem2020
31980611Redox-coupled proton pumping drives carbon concentration in the photosynthetic complex I.Nat Commun2020
33118552Chemical synthesis of ferredoxin with 4 selenocysteine residues using a segment condensation method.Chem Commun (Camb)2020
33015914Structural basis for thioredoxin isoform-based fine-tuning of ferredoxin-thioredoxin reductase activity.Protein Sci2020
32282907X-ray dose-dependent structural changes of the [2Fe-2S] ferredoxin from Chlamydomonas reinhardtii.J Biochem2020
32180325Chlorophyllide a oxidoreductase Preferentially Catalyzes 8-Vinyl Reduction over B-Ring Reduction of 8-Vinyl Chlorophyllide a in the Late Steps of Bacteriochlorophyll Biosynthesis.Chembiochem2020
32356371Copper-Oxygen Dynamics in the Tyrosinase Mechanism.Angew Chem Int Ed Engl2020
30573545Structural adaptations of photosynthetic complex I enable ferredoxin-dependent electron transfer.Science2019
31780431Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures.Structure2019
30988261Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB).Acta Crystallogr D Struct Biol2019
30953671Multicolor redox sensor proteins can visualize redox changes in various compartments of the living cell.Biochim Biophys Acta Gen Subj2019
30888718Electron transport pathways in isolated chromoplasts from Narcissus pseudonarcissus L.Plant J2019
28815765New tools and functions in data-out activities at Protein Data Bank Japan (PDBj).Protein Sci2018
29610537X-ray structure of an asymmetrical trimeric ferredoxin-photosystem I complex.Nat Plants2018
29688351Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data.Database (Oxford)2018
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Collaborators

William A Cramer
Co-authored papers 13
Stephen K Burley
The State University of New Jersey
Co-authored papers 10
Sameer Velankar
European Bioinformatics Institute
Co-authored papers 10
Jeffrey C Hoch
University of Connecticut Health Center
Co-authored papers 7
John D Westbrook
The State University of New Jersey
Co-authored papers 7
Haruki Nakamura
Institute for Protein Research, Osaka University
Co-authored papers 6
Helen M Berman
The State University of New Jersey
Co-authored papers 6
Jasmine Young
The State University of New Jersey
Co-authored papers 5
Zukang Feng
The State University of New Jersey
Co-authored papers 5
Ezra Peisach
The State University of New Jersey
Co-authored papers 5
John L Markley
University of Wisconsin-Madison
Co-authored papers 5
Torsten Schwede
University of Basel
Co-authored papers 3
Catherine L Lawson
Institute for Quantitative Biomedicine, State University of New Jersey
Co-authored papers 3
Brinda Vallat
Institute for Quantitative Biomedicine, State University of New Jersey
Co-authored papers 3
Paul D Adams
Lawrence Berkeley National Laboratory
Co-authored papers 3
Ardan Patwardhan
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 3
Chenghua Shao
The State University of New Jersey
Co-authored papers 3
Toshimichi Fujiwara
Institute for Protein Research, Osaka University
Co-authored papers 3
Andrej Sali (CM4AI)
University of California San Francisco
Co-authored papers 3
Irina Persikova
The State University of New Jersey
Co-authored papers 2
Vladimir Guranovic
The State University of New Jersey
Co-authored papers 2
Juergen Haas
University of Basel
Co-authored papers 2
Benjamin Webb
University of California san francisco
Co-authored papers 2
Jill Trewhella
The University of Sydney
Co-authored papers 2
Yuhe Liang
The State University of New Jersey
Co-authored papers 2
Clemens Vonrhein
Global Phasing Ltd
Co-authored papers 2
Aleksandras Gutmanas
European Bioinformatics Institute
Co-authored papers 2
Swanand Gore
Co-authored papers 1
Bridget Carragher
Columbia University
Co-authored papers 1
Christian A Hanke
Heinrich Heine University Dusseldorf
Co-authored papers 1
Release 1.2