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Author Details

Michael A Kennedy
Miami University
1993
171
31
Nevan J Krogan (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36712039Blind Assessment of Monomeric AlphaFold2 Protein Structure Models with Experimental NMR Data.bioRxiv2023
37257257Blind assessment of monomeric AlphaFold2 protein structure models with experimental NMR data.J Magn Reson2023
37378680Statistical considerations and database limitations in NMR-based metabolic profiling studies.Metabolomics2023
34322903Introduction of a new scheme for classifying β-turns in protein structures.Proteins2022
34049471Intra-species sialic acid polymorphism in humans: a common niche for influenza and coronavirus pandemics?Emerg Microbes Infect2021
33843271NMR-based serum and urine metabolomic profile reveals suppression of mitochondrial pathways in experimental sepsis-associated acute kidney injury.Am J Physiol Renal Physiol2021
33925937Current Understanding of the Structure and Function of Pentapeptide Repeat Proteins.Biomolecules2021
34475219Structural basis of P[II] rotavirus evolution and host ranges under selection of histo-blood group antigens.Proc Natl Acad Sci U S A2021
31294849Solution NMR structure of CGL2373, a polyketide cyclase-like protein from Corynebacterium glutamicum.Proteins2020
31713614Structural insight into the length-dependent binding of ssDNA by SP_0782 from Streptococcus pneumoniae, reveals a divergence in the DNA-binding interface of PC4-like proteins.Nucleic Acids Res2020
32092202Crystal structure of Alr1298, a pentapeptide repeat protein from the cyanobacterium Nostoc sp. PCC 7120, determined at 2.1 ÿ resolution.Proteins2020
32548861Structural dynamics of pentapeptide repeat proteins.Proteins2020
32208455Molecular basis of P[II] major human rotavirus VP8* domain recognition of histo-blood group antigens.PLoS Pathog2020
30368907Solution NMR structure of CHU_1110 from Cytophaga hutchinsonii, an AHSA1 protein potentially involved in metal ion stress response.Proteins2019
31908796Spatial variations in gut permeability are linked to type 1 diabetes development in non-obese diabetic mice.BMJ Open Diabetes Res Care2019
31683565Influence of Drying Method on NMR-Based Metabolic Profiling of Human Cell Lines.Metabolites2019
32647815Type I beta turns make a new twist in pentapeptide repeat proteins: Crystal structure of Alr5209 from Nostoc sp. PCC 7120 determined at 1.7 angström resolution.J Struct Biol X2019
31296381Solution NMR structure and ligand identification of human Gas7 SH3 domain reveal a typical SH3 fold but a non-canonical ligand-binding mode.Biochem Biophys Res Commun2019
30806220Evaluation of the Antibacterial Activity of 75 Mushrooms Collected in the Vicinity of Oxford, Ohio (USA).Int J Med Mushrooms2019
30830432RANCM: a new ranking scheme for assigning confidence levels to metabolite assignments in NMR-based metabolomics studies.Metabolomics2019
28856609Chemical shift assignments of Mb1858 (24-155), a FHA domain-containing protein from Mycobacterium bovis.Biomol NMR Assign2018
30165040Solution structure of SHIP2 SH2 domain and its interaction with a phosphotyrosine peptide from c-MET.Arch Biochem Biophys2018
29993280NMR-based urine metabolic profiling and immunohistochemistry analysis of nephron changes in a mouse model of hypoxia-induced acute kidney injury.Am J Physiol Renal Physiol2018
30016349NMR-based metabolic profiling of urine, serum, fecal, and pancreatic tissue samples from the Ptf1a-Cre; LSL-KrasG12D transgenic mouse model of pancreatic cancer.PLoS One2018
30830358Influence of media selection on NMR based metabolic profiling of human cell lines.Metabolomics2018
29355528Structural insights into the impact of two holoprosencephaly-related mutations on human TGIF1 homeodomain.Biochem Biophys Res Commun2018
29462157A mouse model study of toxicity and biodistribution of a replication defective adenovirus serotype 5 virus with its genome engineered to contain a decoy hyper binding site to sequester and suppress oncogenic HMGA1 as a new cancer treatment therapy.PLoS One2018
29511732Adenovirus-Mediated Delivery of Decoy Hyper Binding Sites Targeting Oncogenic HMGA1 Reduces Pancreatic and Liver Cancer Cell Viability.Mol Ther Oncolytics2018
28978534NMR spectroscopy and electron microscopy identification of metabolic and ultrastructural changes to the kidney following ischemia-reperfusion injury.Am J Physiol Renal Physiol2018
28653216NMR characterization of HtpG, the E. coli Hsp90, using sparse labeling with <sup>13</sup>C-methyl alanine.J Biomol NMR2017
28160315Solution NMR structure of RHE_CH02687 from Rhizobium etli: A novel flavonoid-binding protein.Proteins2017
28160313Solution NMR structure of zinc finger 4 and 5 from human INSM1, an essential regulator of neuroendocrine differentiation.Proteins2017
28421168Contribution of the <i>A. baumannii</i> A1S_0114 Gene to the Interaction with Eukaryotic Cells and Virulence.Front Cell Infect Microbiol2017
29199977Structural insight into the rearrangement of the switch I region in GTP-bound G12A K-Ras.Acta Crystallogr D Struct Biol2017
29121082The Mouse Model of Pancreatic Cancer Atlas (MMPCA) for classification of pancreatic cancer lesions: A large histological investigation of the Ptf1aCre/+;LSL-KrasG12D/+ transgenic mouse model of pancreatic cancer.PLoS One2017
29136651Structural basis of glycan specificity of P[19] VP8*: Implications for rotavirus zoonosis and evolution.PLoS Pathog2017
28538145NMR Analysis of Amide Hydrogen Exchange Rates in a Pentapeptide-Repeat Protein from A. thaliana.Biophys J2017
28697176HMGA1 expression levels are elevated in pancreatic intraepithelial neoplasia cells in the Ptf1a-Cre; LSL-KrasG12D transgenic mouse model of pancreatic cancer.Br J Cancer2017
28872120Dissection of the Mouse Pancreas for Histological Analysis and Metabolic Profiling.J Vis Exp2017
28825188Chemical shift assignments of polyketide cyclase_like protein CGL2373 from Corynebacterium glutamicum.Biomol NMR Assign2017
28742020Symmetry broken and rebroken during the ATP hydrolysis cycle of the mitochondrial Hsp90 TRAP1.Elife2017
27386853Chemical shift assignments of the homodimer protein SP_0782 (7-79) from Streptococcus pneumoniae.Biomol NMR Assign2016
26293815A community resource of experimental data for NMR / X-ray crystal structure pairs.Protein Sci2016
27558427Glycan Specificity of P[19] Rotavirus and Comparison with Those of Related P Genotypes.J Virol2016
26071966The second round of Critical Assessment of Automated Structure Determination of Proteins by NMR: CASD-NMR-2013.J Biomol NMR2015
24203336Applications of NMR-based PRE and EPR-based DEER spectroscopy to homodimer chain exchange characterization and structure determination.Methods Mol Biol2014
26273236Prolonged antibiotic use induces intestinal injury in mice that is repaired after removing antibiotic pressure: implications for empiric antibiotic therapy.Metabolomics2014
25270885Solution structure of a C-terminal fragment (175-257) of CV_0373 protein from Chromobacterium violaceum adopts a winged helix-turn-helix (wHTH) fold.J Biomol NMR2014
25173411Solution structure of the free Zα domain of human DLM-1 (ZBP1/DAI), a Z-DNA binding domain.J Biomol NMR2014
25079510Structure-guided functional characterization of enediyne self-sacrifice resistance proteins, CalU16 and CalU19.ACS Chem Biol2014
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Collaborators

Rensselaer Polytechnic Institute
Co-authored papers 38
Pacific Northwest National Laboratory
Co-authored papers 36
School of Public Health, Capital Medical University
Co-authored papers 24
Center for Advanced Biotechnology and Medicine, The State University of New Jersey
Co-authored papers 23
University of Toronto
Co-authored papers 22
University of Toronto
Co-authored papers 16
University of Toronto
Co-authored papers 12
Center for Advanced Biotechnology and Medicine, The State University of New Jersey
Co-authored papers 8
Technical University of Munich (TUM)
Co-authored papers 7
Columbia University
Co-authored papers 7
Robert Wood Johnson Medical School, The State University of New Jersey
Co-authored papers 7
Columbia University
Co-authored papers 5
Instituto de Investigacion Sanitaria La Fe
Co-authored papers 5
Co-authored papers 4
Columbia University Irving Medical Center
Co-authored papers 4
University of California, USA Quantitative Biosciences Institute (QBI) san francisco
Co-authored papers 3
University of Washington
Co-authored papers 3
Co-authored papers 2
Columbia University Irving Medical Center
Co-authored papers 2
Leicester Institute of Structural and Chemical Biology, University of Leicester
Co-authored papers 2
Los Alamos National Laboratory
Co-authored papers 2
Co-authored papers 2
University of Wisconsin-Madison
Co-authored papers 2
Center for Advanced Biotechnology and Medicine, The State University of New Jersey
Co-authored papers 2
Bio-X Institutes, Shanghai Jiao Tong University
Co-authored papers 2
Los Alamos National Laboratory
Co-authored papers 2
Co-authored papers 2
The University of Texas MD Anderson Cancer Center
Co-authored papers 2
Center for Integrated Protein Science, Technische Universitat Munchen
Co-authored papers 2
University of Toronto
Co-authored papers 2