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Author Details

Marcel Huntemann
DOE Joint Genome Institute, Lawrence Berkeley National Laboratory
2006
187
30
PMIDPaper TitleJournal TitlePublished Year
37930866IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata.Nucleic Acids Res2024
36382399The IMG/M data management and analysis system v.7: content updates and new features.Nucleic Acids Res2023
37310219Terabase-Scale Coassembly of a Tropical Soil Microbiome.Microbiol Spectr2023
36925474Discovery of a novel filamentous prophage in the genome of the <i>Mimosa pudica</i> microsymbiont <i>Cupriavidus taiwanensis</i> STM 6018.Front Microbiol2023
36536072Plant microbiomes harbor potential to promote nutrient turnover in impoverished substrates of a Brazilian biodiversity hotspot.ISME J2023
36251644Multiomics in the central Arctic Ocean for benchmarking biodiversity change.PLoS Biol2022
35579457Sodalis ligni Strain 159R Isolated from an Anaerobic Lignin-Degrading Consortium.Microbiol Spectr2022
36778052Expanding the genomic encyclopedia of <i>Actinobacteria</i> with 824 isolate reference genomes.Cell Genom2022
36069554Draft Metagenome Sequences of the <i>Sphagnum</i> (Peat Moss) Microbiome from Ambient and Warmed Environments across Europe.Microbiol Resour Announc2022
36303775Challenges in Bioinformatics Workflows for Processing Microbiome Omics Data at Scale.Front Bioinform2022
33119741The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities.Nucleic Acids Res2021
34531387The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole.Nat Commun2021
34017316Genomics, Exometabolomics, and Metabolic Probing Reveal Conserved Proteolytic Metabolism of <i>Thermoflexus hugenholtzii</i> and Three Candidate Species From China and Japan.Front Microbiol2021
34006627DOE JGI Metagenome Workflow.mSystems2021
34140946Genome Analysis of a Verrucomicrobial Endosymbiont With a Tiny Genome Discovered in an Antarctic Lake.Front Microbiol2021
34080906Metagenome Sequencing to Explore Phylogenomics of Terrestrial Cyanobacteria.Microbiol Resour Announc2021
33208936Publisher Correction: A genomic catalog of Earth's microbiomes.Nat Biotechnol2021
32350400The National Microbiome Data Collaborative: enabling microbiome science.Nat Rev Microbiol2020
32001557One Complete and Seven Draft Genome Sequences of Subdivision 1 and 3 <i>Acidobacteria</i> Isolated from Soil.Microbiol Resour Announc2020
31896648Metatranscriptomic Sequencing of a Cyanobacterial Soil-Surface Consortium with and without a Diverse Underlying Soil Microbiome.Microbiol Resour Announc2020
33033130Metagenomes from Experimental Hydrologic Manipulation of Restored Coastal Plain Wetland Soils (Tyrell County, North Carolina).Microbiol Resour Announc2020
33122409Metagenomes and Metatranscriptomes of a Glucose-Amended Agricultural Soil.Microbiol Resour Announc2020
32772914Influence of the polar light cycle on seasonal dynamics of an Antarctic lake microbial community.Microbiome2020
32900811Molecular Dialogues between Early Divergent Fungi and Bacteria in an Antagonism versus a Mutualism.mBio2020
32273354Draft Genome Sequence of Yokenella regensburgei Strain WCD67, Isolated from the Boxelder Bug.Microbiol Resour Announc2020
32143559Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil.BMC Genomics2020
30407573IMG/VR v.2.0: an integrated data management and analysis system for cultivated and environmental viral genomes.Nucleic Acids Res2019
32974501High-quality draft genome sequences of <i>Pseudomonas monteilii</i> DSM 14164<sup>T</sup>, <i>Pseudomonas mosselii</i> DSM 17497<sup>T</sup>, <i>Pseudomonas plecoglossicida</i> DSM 15088<sup>T</sup>, <i>Pseudomonas taiwanensis</i> DSM 21245<sup>T</sup> and <i>Pseudomonas vranovensis</i> DSM 16006<sup>T</sup>: taxonomic considerations.Access Microbiol2019
31366912Microbiomes of Velloziaceae from phosphorus-impoverished soils of the campos rupestres, a biodiversity hotspot.Sci Data2019
31619684Metagenomes and metatranscriptomes from boreal potential and actual acid sulfate soil materials.Sci Data2019
31332186Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom.Sci Data2019
30948472Complete Genome Sequence for <i>Asinibacterium</i> sp. Strain OR53 and Draft Genome Sequence for <i>Asinibacterium</i> sp. Strain OR43, Two Bacteria Tolerant to Uranium.Microbiol Resour Announc2019
30820638Draft Genome of Burkholderia cenocepacia TAtl-371, a Strain from the Burkholderia cepacia Complex Retains Antagonism in Different Carbon and Nitrogen Sources.Curr Microbiol2019
31048387Complete Genome Sequence of Serratia quinivorans Strain 124R, a Facultative Anaerobe Isolated on Organosolv Lignin as a Sole Carbon Source.Microbiol Resour Announc2019
30289528IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes.Nucleic Acids Res2019
29326212Complete Genome Sequence of <i>Thermoanaerobacterium</i> sp. Strain RBIITD, a Butyrate- and Butanol-Producing Thermophile.Genome Announc2018
30533809High-Quality Draft Genome Sequences of Eight Bacteria Isolated from Fungus Gardens Grown by Trachymyrmex septentrionalis Ants.Microbiol Resour Announc2018
30533634Draft Genome Sequences of New Isolates and the Known Species of the Family Microbacteriaceae Associated with Plants.Microbiol Resour Announc2018
29576763Corrigendum: Genome Data Provides High Support for Generic Boundaries in <i>Burkholderia</i> Sensu Lato.Front Microbiol2018
29521452Genomes of ubiquitous marine and hypersaline Hydrogenovibrio, Thiomicrorhabdus and Thiomicrospira spp. encode a diversity of mechanisms to sustain chemolithoautotrophy in heterogeneous environments.Environ Microbiol2018
29491863Corrigendum: Genome-Based Taxonomic Classification of <i>Bacteroidetes</i>.Front Microbiol2018
29437089Draft Genome Sequences of Three Strains of a Novel <i>Rhizobiales</i> Species Isolated from Forest Soil.Genome Announc2018
29371348Genome Sequence of <i>Verrucomicrobium</i> sp. Strain GAS474, a Novel Bacterium Isolated from Soil.Genome Announc2018
27799466IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses.Nucleic Acids Res2017
28302769Complete Genome Sequence of <i>Nitrosomonas cryotolerans</i> ATCC 49181, a Phylogenetically Distinct Ammonia-Oxidizing Bacterium Isolated from Arctic Waters.Genome Announc2017
28250895High-quality-draft genome sequence of the fermenting bacterium <i>Anaerobium acetethylicum</i> type strain GluBS11<sup>T</sup> (DSM 29698).Stand Genomic Sci2017
28127420Permanent draft genome of <i>Thiobacillus thioparus</i> DSM 505<sup>T</sup>, an obligately chemolithoautotrophic member of the <i>Betaproteobacteria</i>.Stand Genomic Sci2017
28348879Absence of genome reduction in diverse, facultative endohyphal bacteria.Microb Genom2017
28116041High-quality draft genome sequence of <i>Rhizobium mesoamericanum</i> strain STM6155, a <i>Mimosa pudica</i> microsymbiont from New Caledonia.Stand Genomic Sci2017
28174619Complete genome sequence of <i>Jiangella gansuensis</i> strain YIM 002<sup>T</sup> (DSM 44835<sup>T</sup>), the type species of the genus <i>Jiangella</i> and source of new antibiotic compounds.Stand Genomic Sci2017
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Collaborators

Co-authored papers 175
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Department of Energy (DOE) Joint Genome Institute
Co-authored papers 101
Celgene Corporation
Co-authored papers 82
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Co-authored papers 80
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Co-authored papers 60
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Los Alamos National Laboratory
Co-authored papers 48
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Center for Algorithmic Biotechnology, Saint Petersburg State University
Co-authored papers 44
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Co-authored papers 35
Cleveland Clinic Akron General Medical Center
Co-authored papers 29
McLean Hospital
Co-authored papers 28
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Co-authored papers 24
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Co-authored papers 17
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Co-authored papers 14
Co-authored papers 13
Los Alamos National Laboratory
Co-authored papers 13
Los Alamos National Laboratory
Co-authored papers 12
University of Massachusetts
Co-authored papers 4
US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory
Co-authored papers 4
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Scripps Institution of Oceanography, University of California San Diego
Co-authored papers 2
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US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory
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