Author details

Full Name

Fiona M McCarthy

Affiliation

University of Arizona

ORCID

Career Start Year

1999

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37549140	Proteomic insight into human directed selection of the domesticated chicken Gallus gallus.	PLoS One	2023
34442314	Workflows for Rapid Functional Annotation of Diverse Arthropod Genomes.	Insects	2021
34710081	Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO).	PLoS Comput Biol	2021
30764491	Comparison of the Transcriptomes and Proteomes of Serum Exosomes from Marek's Disease Virus-Vaccinated and Protected and Lymphoma-Bearing Chickens.	Genes (Basel)	2019
30095738	Oxygen Perfusion (Persufflation) of Human Pancreata Enhances Insulin Secretion and Attenuates Islet Proinflammatory Signaling.	Transplantation	2019
31210271	Chickspress: a resource for chicken gene expression.	Database (Oxford)	2019
31119093	Modeling the pasture-associated severe equine asthma bronchoalveolar lavage fluid proteome identifies molecular events mediating neutrophilic airway inflammation.	Vet Med (Auckl)	2019
30040202	Leveraging Experimental Details for an Improved Understanding of Host-Pathogen Interactome.	Curr Protoc Bioinformatics	2018
30239679	AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture.	Database (Oxford)	2018
30052287	In vitro characterization of neonatal, juvenile, and adult porcine islet oxygen demand, Î²-cell function, and transcriptomes.	Xenotransplantation	2018
28518075	Leveraging CyVerse Resources for De Novo Comparative Transcriptomics of Underserved (Non-model) Organisms.	J Vis Exp	2017
28200173	RNA Sequencing Exposes Adaptive and Immune Responses to Intrauterine Growth Restriction in Fetal Sheep Islets.	Endocrinology	2017
28137821	Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling.	Genome Res	2017
28263224	Acute Ischemia Induced by High-Density Culture Increases Cytokine Expression and Diminishes the Function and Viability of Highly Purified Human Islets of Langerhans.	Transplantation	2017
27374121	HPIDB 2.0: a curated database for host-pathogen interactions.	Database (Oxford)	2016
27639274	Resources and Recommendations for Using Transcriptomics to Address Grand Challenges in Comparative Biology.	Integr Comp Biol	2016
25400247	Transgenic soya bean seeds accumulating Î²-carotene exhibit the collateral enhancements of oleate and protein content traits.	Plant Biotechnol J	2015
26500483	Identification of dopamine receptors across the extant avian family tree and analysis with other clades uncovers a polyploid expansion among vertebrates.	Front Neurosci	2015
26282327	Third Report on Chicken Genes and Chromosomes 2015.	Cytogenet Genome Res	2015
26238561	Transcriptome response to heat stress in a chicken hepatocellular carcinoma cell line.	Cell Stress Chaperones	2015
25854118	Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project.	Genome Biol	2015
24821410	De novo transcriptome assembly and analyses of gene expression during photomorphogenesis in diploid wheat Triticum monococcum.	PLoS One	2014
32670841	Identification of canine platelet proteins separated by differential detergent fractionation for nonelectrophoretic proteomics analyzed by Gene Ontology and pathways analysis.	Vet Med (Auckl)	2014
25503521	Comparative genome analyses reveal distinct structure in the saltwater crocodile MHC.	PLoS One	2014
25504731	Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs.	Science	2014
23161678	Gene Ontology annotations and resources.	Nucleic Acids Res	2013
23850840	Interestingness measures and strategies for mining multi-ontology multi-level association rules from gene ontology annotations for the discovery of new GO relationships.	J Biomed Inform	2013
23960137	From data to function: functional modeling of poultry genomics data.	Poult Sci	2013
23409192	Stallion sperm transcriptome comprises functionally coherent coding and regulatory RNAs as revealed by microarray analysis and RNA-seq.	PLoS One	2013
21748442	Systemic response to Campylobacter jejuni infection by profiling gene transcription in the spleens of two genetic lines of chickens.	Immunogenetics	2012
23160411	Developing a biocuration workflow for AgBase, a non-model organism database.	Database (Oxford)	2012
23071802	Cross-Ontology multi-level association rule mining in the Gene Ontology.	PLoS One	2012
22253803	Transcriptome-based differentiation of closely-related Miscanthus lines.	PLoS One	2012
22293439	Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes.	Genome Biol	2012
21075795	AgBase: supporting functional modeling in agricultural organisms.	Nucleic Acids Res	2011
21818329	The enigma of number: why children find the meanings of even small number words hard to learn and how we can help them do better.	PLoS One	2011
21513508	The proteogenomic mapping tool.	BMC Bioinformatics	2011
21749422	Functional modelling of an equine bronchoalveolar lavage fluid proteome provides experimental confirmation and functional annotation of equine genome sequences.	Anim Genet	2011
20214824	Transcriptional and pathway analysis in the hypothalamus of newly hatched chicks during fasting and delayed feeding.	BMC Genomics	2010
21313835	Tibial dyschondroplasia-associated proteomic changes in chicken growth plate cartilage.	Avian Dis	2010
20946620	Analysis of Bovine Viral Diarrhea Viruses-infected monocytes: identification of cytopathic and non-cytopathic biotype differences.	BMC Bioinformatics	2010
20946613	GOModeler--a tool for hypothesis-testing of functional genomics datasets.	BMC Bioinformatics	2010
20498845	Re-annotation is an essential step in systems biology modeling of functional genomics data.	PLoS One	2010
20662101	Proteome profile of the developing maize (Zea mays L.) rachis.	Proteomics	2010
19153687	Sequential detergent extraction prior to mass spectrometry analysis.	Methods Mol Biol	2009
19577474	Understanding animal viruses using the Gene Ontology.	Trends Microbiol	2009
19607656	The Chicken Gene Nomenclature Committee report.	BMC Genomics	2009
19607650	Introduction to the proceedings of the Avian Genomics and Gene Ontology Annotation Workshop.	BMC Genomics	2009
19811692	Structural and functional-annotation of an equine whole genome oligoarray.	BMC Bioinformatics	2009
19811685	Facilitating functional annotation of chicken microarray data.	BMC Bioinformatics	2009

1 - 50 of 68

Francesco Strozzi

Fondazione Parco Tecnologico Padano

Career Start Year 2009

Number of shared co-authors 1

Tamsyn M Crowley

Deakin University

Career Start Year 2009

Number of shared co-authors 0

Matthew L Settles

University of California Davis Genome Center

Career Start Year 2008

Number of shared co-authors 0

Prashanth Suravajhala

Amrita University

Career Start Year 2007

Number of shared co-authors 2

Andy D Perkins

Mississippi State University

Career Start Year 2006

Number of shared co-authors 1

Anne Niknejad

University of Lausanne

Career Start Year 2004

Number of shared co-authors 15

Joshua Orvis

Institute for Genome Sciences, University of Maryland School of Medicine

Career Start Year 2004

Number of shared co-authors 8

Don Gilbert

Indiana University

Career Start Year 2002

Number of shared co-authors 8

Scott H Harrison

North Carolina Agricultural and Technical State University

Career Start Year 2002

Number of shared co-authors 0

Tyler Alioto

Universitat de Barcelona (UB)

Career Start Year 2001

Number of shared co-authors 15

Ana Conesa

Institute for Integrative Systems Biology, Spanish National Research Council (CSIC)

Career Start Year 2000

Number of shared co-authors 9

Karsten Hokamp

Smurfit Institute of Genetics, Trinity College of Dublin

Career Start Year 1999

Number of shared co-authors 4

Lars Juhl Jensen

Novo Nordisk Foundation Center for Protein Research, University of Copenhagen

Career Start Year 1998

Number of shared co-authors 12

David R Powell

Biomedicine Discovery Institute, Monash University

Career Start Year 1998

Number of shared co-authors 0

Hidemasa Bono

Hiroshima University

Career Start Year 1997

Number of shared co-authors 13

John Parkinson

The Hospital for Sick Children

Career Start Year 1994

Number of shared co-authors 1

Terry Gaasterland

Scripps Institution of Oceanography, University of California San Diego

Career Start Year 1994

Number of shared co-authors 7

Bianca Habermann

Aix Marseille University, CNRS, Turing Center for Living Systems

Career Start Year 1993

Number of shared co-authors 0

Simon Kasif

Boston University

Career Start Year 1993

Number of shared co-authors 4

Jason E McDermott

Pacific Northwest National Laboratory

Career Start Year 1993

Number of shared co-authors 0

Marc R Wilkins

University of New South Wales

Career Start Year 1992

Number of shared co-authors 2

Kim C Worley

Baylor College of Medicine

Career Start Year 1991

Number of shared co-authors 27

Winston Hide

Harvard Medical School

Career Start Year 1991

Number of shared co-authors 16

Peer Bork

University of Wurzburg

Career Start Year 1989

Number of shared co-authors 27

Lincoln Stein

Ontario Institute for Cancer Research, University Avenue

Career Start Year 1986

Number of shared co-authors 38

David L Adelson

University of Adelaide

Career Start Year 1985

Number of shared co-authors 8

Justin T Reese

Lawrence Berkeley National Laboratory

Career Start Year 1985

Number of shared co-authors 18

Martin Kuiper

Norwegian University of Science and Technology

Career Start Year 1983

Number of shared co-authors 13

Darren A Natale

Georgetown University Medical Center

Career Start Year 1982

Number of shared co-authors 35

Christian J Stoeckert

Perelman School of Medicine, University of Pennsylvania

Career Start Year 1980

Number of shared co-authors 20

row(s) 1 - 30 of 30

Susan M Bridges

Mississippi State University

Co-authored papers 14

Carl J Schmidt

Co-authored papers 10

David A Ray

Co-authored papers 5

Teresia J Buza

Pennsylvania State University, University Park, State College

Co-authored papers 5

Prashanti Manda

University of North Carolina at Greensboro

Co-authored papers 4

David W Burt

The Roslin Institute & R(D)SVS, University of Edinburgh

Co-authored papers 3

Lakshmi Pillai

University of Arkansas for Medical Sciences

Co-authored papers 3

Tanya Z Berardini

Carnegie Institution for Science

Co-authored papers 3

Richard E Green

Co-authored papers 3

Catalina O Tudor

Center for Bioinformatics and Computational Biology, University of Delaware

Co-authored papers 2

Adrienne E Zweifel

Texas A&M University, College Station

Co-authored papers 2

Christine G Elsik

University of Missouri

Co-authored papers 2

Ruth C Lovering

University College London, Institute for Cardiovascular Science

Co-authored papers 2

Paul Kersey

European Bioinformatics Institute

Co-authored papers 2

Sushma Naithani

Oregon State University

Co-authored papers 2

K Vijay-Shanker

Co-authored papers 2

Gerard R Lazo

Western Regional Research Center, Crop Improvement and Genetics Research Unit

Co-authored papers 2

Christopher J Mungall

International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences

Co-authored papers 2

Monica F Poelchau

USDA Agricultural Research Service

Co-authored papers 2

James M Reecy

Iowa State University

Co-authored papers 2

David P Hill

Co-authored papers 2

James C Hu

Texas A&M University and Texas Agrilife Research, College Station

Co-authored papers 2