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Author Details

Krutika S Gaonkar
Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia
2012
18
11
PMIDPaper TitleJournal TitlePublished Year
36541551Alternative lengthening of telomeres (ALT) in pediatric high-grade gliomas can occur without ATRX mutation and is enriched in patients with pathogenic germline mismatch repair (MMR) variants.Neuro Oncol2023
36541551Alternative lengthening of telomeres (ALT) in pediatric high-grade gliomas can occur without ATRX mutation and is enriched in patients with pathogenic germline mismatch repair (MMR) variants.Neuro Oncol2023
37235472Macrophages in SHH subgroup medulloblastoma display dynamic heterogeneity that varies with treatment modality.Cell Rep2023
37492101OpenPBTA: The Open Pediatric Brain Tumor Atlas.Cell Genom2023
37492101OpenPBTA: The Open Pediatric Brain Tumor Atlas.Cell Genom2023
37235472Macrophages in SHH subgroup medulloblastoma display dynamic heterogeneity that varies with treatment modality.Cell Rep2023
35852795Upfront Biology-Guided Therapy in Diffuse Intrinsic Pontine Glioma: Therapeutic, Molecular, and Biomarker Outcomes from PNOC003.Clin Cancer Res2022
35852795Upfront Biology-Guided Therapy in Diffuse Intrinsic Pontine Glioma: Therapeutic, Molecular, and Biomarker Outcomes from PNOC003.Clin Cancer Res2022
33789113Macrophages in SHH subgroup medulloblastoma display dynamic heterogeneity that varies with treatment modality.Cell Rep2021
33789113Macrophages in SHH subgroup medulloblastoma display dynamic heterogeneity that varies with treatment modality.Cell Rep2021
31613963Pediatric high-grade glioma resources from the Children's Brain Tumor Tissue Consortium.Neuro Oncol2020
32319659RET receptor expression and interaction with TRK receptors in neuroblastomas.Oncol Rep2020
31613963Pediatric high-grade glioma resources from the Children's Brain Tumor Tissue Consortium.Neuro Oncol2020
33317447annoFuse: an R Package to annotate, prioritize, and interactively explore putative oncogenic RNA fusions.BMC Bioinformatics2020
33317447annoFuse: an R Package to annotate, prioritize, and interactively explore putative oncogenic RNA fusions.BMC Bioinformatics2020
32319659RET receptor expression and interaction with TRK receptors in neuroblastomas.Oncol Rep2020
30657451HDAC3 restrains CD8-lineage genes to maintain a bi-potential state in CD4<sup>+</sup>CD8<sup>+</sup> thymocytes for CD4-lineage commitment.Elife2019
31693904Genomic Profiling of Childhood Tumor Patient-Derived Xenograft Models to Enable Rational Clinical Trial Design.Cell Rep2019
31577830A tailored approach to fusion transcript identification increases diagnosis of rare inherited disease.PLoS One2019
30657451HDAC3 restrains CD8-lineage genes to maintain a bi-potential state in CD4<sup>+</sup>CD8<sup>+</sup> thymocytes for CD4-lineage commitment.Elife2019
30943272Identification of factors associated with duplicate rate in ChIP-seq data.PLoS One2019
31101622Recurrent <i>MSC</i> <sup>E116K</sup> mutations in ALK-negative anaplastic large cell lymphoma.Blood2019
31693904Genomic Profiling of Childhood Tumor Patient-Derived Xenograft Models to Enable Rational Clinical Trial Design.Cell Rep2019
31577830A tailored approach to fusion transcript identification increases diagnosis of rare inherited disease.PLoS One2019
31101622Recurrent <i>MSC</i> <sup>E116K</sup> mutations in ALK-negative anaplastic large cell lymphoma.Blood2019
30943272Identification of factors associated with duplicate rate in ChIP-seq data.PLoS One2019
29434212CARM1-expressing ovarian cancer depends on the histone methyltransferase EZH2 activity.Nat Commun2018
29434212CARM1-expressing ovarian cancer depends on the histone methyltransferase EZH2 activity.Nat Commun2018
29500314Postnatal Ontogenesis of the Islet Circadian Clock Plays a Contributory Role in β-Cell Maturation Process.Diabetes2018
29773832Distinct epigenetic landscapes underlie the pathobiology of pancreatic cancer subtypes.Nat Commun2018
29500314Postnatal Ontogenesis of the Islet Circadian Clock Plays a Contributory Role in β-Cell Maturation Process.Diabetes2018
29773832Distinct epigenetic landscapes underlie the pathobiology of pancreatic cancer subtypes.Nat Commun2018
28348210Myosin-1E interacts with FAK proline-rich region 1 to induce fibronectin-type matrix.Proc Natl Acad Sci U S A2017
28348210Myosin-1E interacts with FAK proline-rich region 1 to induce fibronectin-type matrix.Proc Natl Acad Sci U S A2017
23292690Structure based energy calculation to determine the regulation of G protein signalling by RGS and RGS-G protein interaction specificity.Interdiscip Sci2012
23292690Structure based energy calculation to determine the regulation of G protein signalling by RGS and RGS-G protein interaction specificity.Interdiscip Sci2012
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Collaborators

Pichai Raman
Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia
Co-authored papers 7
Adam C Resnick
Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia
Co-authored papers 5
Komal S Rathi
Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia
Co-authored papers 5
Sharon J Diskin
Children's Hospital of Philadelphia
Co-authored papers 4
Jaclyn N Taroni
Alex's Lemonade Stand Foundation
Co-authored papers 4
Casey S Greene
Dartmouth College Geisel School of Medicine, Princeton University, University of Colorado Anschutz Medical Campus, University of Pennsylvania Perelman School of Medicine
Co-authored papers 4
Zalman Vaksman
Children's Hospital of Philadelphia
Co-authored papers 4
Kristina A Cole
Perelman School of Medicine, University of Pennsylvania
Co-authored papers 3
Phillip B Storm
Children's Hospital of Philadelphia
Co-authored papers 3
Mariarita Santi
Children's Hospital of Philadelphia
Co-authored papers 3
Gonzalo L??pez
Children's Hospital of Philadelphia
Co-authored papers 3
Candace L Savonen
Johns Hopkins Bloomberg School of Public Health
Co-authored papers 3
Javad Nazarian
USA University of Zurich
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Angela J Waanders
Ann & Robert H. Lurie Children's Hospital
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Payal Jain
Maharaja Agrasen Medical College
Co-authored papers 3
Cassie Kline
Children's Hospital of Philadelphia
Co-authored papers 2
Samir Devalaraja
Perelman School of Medicine, University of Pennsylvania
Co-authored papers 2
Jung Kim
Clinical Genetics Branch, National Cancer Institute
Co-authored papers 2
Adam A Kraya
Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia
Co-authored papers 2
Md Zahidul Alam
Perelman School of Medicine, University of Pennsylvania
Co-authored papers 2
Heba Ijaz
Co-authored papers 2
Rishi R Lulla
Hasbro Children's Hospital, Brown University.
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Mateusz Koptyra
Children's Hospital of Philadelphia
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Eric W Klee
Mayo Clinic College of Medicine and Science
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Sabine Mueller
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Ian W Folkert
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John M Maris
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