Author details

Full Name

Pelin Yilmaz

Affiliation

ORCID

Career Start Year

2010

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
34732889	Terrestrial-type nitrogen-fixing symbiosis between seagrass and a marine bacterium.	Nature	2021
32770117	Versatile cyanobacteria control the timing and extent of sulfide production in a Proterozoic analog microbial mat.	ISME Journal	2020
33151140	Proposal to reclassify the proteobacterial classes and , and the phylum into four phyla reflecting major functional capabilities.	International Journal of Systematic and Evolutionary Microbiology	2020
30715273	Meta-omics data and collection objects (MOD-CO): a conceptual schema and data model for processing sample data in meta-omics research.	Database : the journal of biological databases and curation	2019
30556814	Minimum Information about an Uncultivated Virus Genome (MIUViG).	Nat Biotechnol	2019
30098831	The importance of designating type material for uncultured taxa.	Systematic and Applied Microbiology	2019
30863673	Improved taxonomic assignment of rumen bacterial 16S rRNA sequences using a revised SILVA taxonomic framework.	PeerJ	2019
29406516	Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.	Nat Biotechnol	2018
29979671	Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.	Nat Biotechnol	2018
30325293	Refining the taxonomic structure of the phylum Acidobacteria.	International Journal of Systematic and Evolutionary Microbiology	2018
29109973	Adaptability as the key to success for the ubiquitous marine nitrite oxidizer .	Science advances	2017
28648396	25 years of serving the community with ribosomal RNA gene reference databases and tools.	Journal of Biotechnology	2017
28337822	UniEuk: Time to Speak a Common Language in Protistology!	J Eukaryot Microbiol	2017
28578827	A phylogenetic framework for the kingdom Fungi based on 18S rRNA gene sequences.	Marine Genomics	2017
28787424	Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.	Nat Biotechnol	2017
28964270	SILVA tree viewer: interactive web browsing of the SILVA phylogenetic guide trees.	BMC Bioinformatics	2017
27777648	MIxS-HCR: a MIxS extension defining a minimal information standard for sequence data from environments pertaining to hydrocarbon resources.	Standards in Genomic Sciences	2016
28369359	Plant specimen contextual data consensus.	Gigascience	2016
27166378	Phylogeny-aware identification and correction of taxonomically mislabeled sequences.	Nucleic Acids Research	2016
27765035	BioVeL: a virtual laboratory for data analysis and modelling in biodiversity science and ecology.	BMC Ecol	2016
27617976	The small unicellular diazotrophic symbiont, UCYN-A, is a key player in the marine nitrogen cycle.	Nature Microbiology	2016
27694206	The Global Genome Biodiversity Network (GGBN) Data Standard specification.	Database (Oxford)	2016
26284661	Minimum Information about a Biosynthetic Gene cluster.	Nat Chem Biol	2015
25630511	Hydrogen sulfide can inhibit and enhance oxygenic photosynthesis in a cyanobacterium from sulfidic springs.	Environmental Microbiology	2015
25576611	Anoxygenic photosynthesis controls oxygenic photosynthesis in a cyanobacterium from a sulfidic spring.	Applied and Environmental Microbiology	2015
26779174	Expanding the World of Marine Bacterial and Archaeal Clades.	Frontiers in Microbiology	2015
26226014	Identification of Habitat-Specific Biomes of Aquatic Fungal Communities Using a Comprehensive Nearly Full-Length 18S rRNA Dataset Enriched with Contextual Data.	PLoS ONE	2015
26133389	Quest for Orthologs Entails Quest for Tree of Life: In Search of the Gene Stream.	Genome Biol Evol	2015
26466914	The magnitude of gonadotoxicity of chemotherapy drugs on ovarian follicles and granulosa cells varies depending upon the category of the drugs and the type of granulosa cells.	Human Reproduction	2015
25118885	Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences.	Nature Reviews Microbiology	2014
24152717	MIxS-BE: a MIxS extension defining a minimum information standard for sequence data from the built environment.	ISME J	2014
24293649	The SILVA and "All-species Living Tree Project (LTP)" taxonomic frameworks.	Nucleic Acids Research	2014
25197446	Genomic standards consortium projects.	Stand Genomic Sci	2014
23516388	Ecogenomic perspectives on domains of unknown function: correlation-based exploration of marine metagenomes.	PLoS One	2013
24060134	A metagenomics portal for a democratized sequencing world.	Methods Enzymol	2013
23193283	The SILVA ribosomal RNA gene database project: improved data processing and web-based tools.	Nucleic Acids Research	2013
23451295	Meeting Report: Hackathon-Workshop on Darwin Core and MIxS Standards Alignment (February 2012).	Stand Genomic Sci	2012
22416918	Ecological structuring of bacterial and archaeal taxa in surface ocean waters.	FEMS Microbiol Ecol	2012
21935468	CDinFusion--submission-ready, on-line integration of sequence and contextual data.	PLoS One	2011
21472015	The genomic standards consortium: bringing standards to life for microbial ecology.	ISME J	2011
21552244	Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications.	Nat Biotechnol	2011
21676569	Analysis of 23S rRNA genes in metagenomes - a case study from the Global Ocean Sampling Expedition.	Syst Appl Microbiol	2011
21677865	Data shopping in an open marketplace: Introducing the Ontogrator web application for marking up data using ontologies and browsing using facets.	Stand Genomic Sci	2011
19858098	Megx.net: integrated database resource for marine ecological genomics.	Nucleic Acids Res	2010
20591175	MetaBar - a tool for consistent contextual data acquisition and standards compliant submission.	BMC Bioinformatics	2010
21304719	Meeting Report: "Metagenomics, Metadata and Meta-analysis" (M3) Workshop at the Pacific Symposium on Biocomputing 2010.	Stand Genomic Sci	2010
21304725	Meeting report: GSC M5 roundtable at the 13th International Society for Microbial Ecology meeting in Seattle, WA, USA August 22-27, 2010.	Stand Genomic Sci	2010