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Author Details

Joshua Orvis
Institute for Genome Sciences, University of Maryland School of Medicine
2004
40
27
PMIDPaper TitleJournal TitlePublished Year
37390046A guide to the BRAIN Initiative Cell Census Network data ecosystem.PLoS Biol2023
37390046A guide to the BRAIN Initiative Cell Census Network data ecosystem.PLoS Biol2023
35319013Author Correction: Comparative cellular analysis of motor cortex in human, marmoset and mouse.Nature2022
35867761The evolution of synaptic and cognitive capacity: Insights from the nervous system transcriptome of <i>Aplysia</i>.Proc Natl Acad Sci U S A2022
35319013Author Correction: Comparative cellular analysis of motor cortex in human, marmoset and mouse.Nature2022
35867761The evolution of synaptic and cognitive capacity: Insights from the nervous system transcriptome of <i>Aplysia</i>.Proc Natl Acad Sci U S A2022
33305317HMPDACC: a Human Microbiome Project Multi-omic data resource.Nucleic Acids Res2021
34172972gEAR: Gene Expression Analysis Resource portal for community-driven, multi-omic data exploration.Nat Methods2021
33305317HMPDACC: a Human Microbiome Project Multi-omic data resource.Nucleic Acids Res2021
34616066A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex.Nature2021
34616062Comparative cellular analysis of motor cortex in human, marmoset and mouse.Nature2021
34592158A cell-type-specific atlas of the inner ear transcriptional response to acoustic trauma.Cell Rep2021
34616066A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex.Nature2021
34616062Comparative cellular analysis of motor cortex in human, marmoset and mouse.Nature2021
34592158A cell-type-specific atlas of the inner ear transcriptional response to acoustic trauma.Cell Rep2021
34172972gEAR: Gene Expression Analysis Resource portal for community-driven, multi-omic data exploration.Nat Methods2021
32404924Characterization of the development of the mouse cochlear epithelium at the single cell level.Nat Commun2020
32245418Re-annotation of the Theileria parva genome refines 53% of the proteome and uncovers essential components of N-glycosylation, a conserved pathway in many organisms.BMC Genomics2020
32404924Characterization of the development of the mouse cochlear epithelium at the single cell level.Nat Commun2020
33119590Capture-based enrichment of Theileria parva DNA enables full genome assembly of first buffalo-derived strain and reveals exceptional intra-specific genetic diversity.PLoS Negl Trop Dis2020
32781193De novo assembly and annotation of transcriptomes from two cultivars of Cannabis sativa with different cannabinoid profiles.Gene2020
33119590Capture-based enrichment of Theileria parva DNA enables full genome assembly of first buffalo-derived strain and reveals exceptional intra-specific genetic diversity.PLoS Negl Trop Dis2020
32781193De novo assembly and annotation of transcriptomes from two cultivars of Cannabis sativa with different cannabinoid profiles.Gene2020
32245418Re-annotation of the Theileria parva genome refines 53% of the proteome and uncovers essential components of N-glycosylation, a conserved pathway in many organisms.BMC Genomics2020
29022944Erratum: Strains, functions and dynamics in the expanded Human Microbiome Project.Nature2017
28953883Strains, functions and dynamics in the expanded Human Microbiome Project.Nature2017
29022944Erratum: Strains, functions and dynamics in the expanded Human Microbiome Project.Nature2017
28953883Strains, functions and dynamics in the expanded Human Microbiome Project.Nature2017
27519257Annotated draft genome sequences of three species of Cryptosporidium: Cryptosporidium meleagridis isolate UKMEL1, C. baileyi isolate TAMU-09Q1 and C. hominis isolates TU502_2012 and UKH1.Pathog Dis2016
27447865An integrated genomic and transcriptomic survey of mucormycosis-causing fungi.Nat Commun2016
27752055Genome-wide diversity and gene expression profiling of Babesia microti isolates identify polymorphic genes that mediate host-pathogen interactions.Sci Rep2016
27519257Annotated draft genome sequences of three species of Cryptosporidium: Cryptosporidium meleagridis isolate UKMEL1, C. baileyi isolate TAMU-09Q1 and C. hominis isolates TU502_2012 and UKH1.Pathog Dis2016
27752055Genome-wide diversity and gene expression profiling of Babesia microti isolates identify polymorphic genes that mediate host-pathogen interactions.Sci Rep2016
27447865An integrated genomic and transcriptomic survey of mucormycosis-causing fungi.Nat Commun2016
25857734The genome sequence of four isolates from the family Lichtheimiaceae.Pathog Dis2015
25857734The genome sequence of four isolates from the family Lichtheimiaceae.Pathog Dis2015
24194595The Aspergillus Genome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations.Nucleic Acids Res2014
24459263Draft Genome Sequence of Mortierella alpina Isolate CDC-B6842.Genome Announc2014
24194595The Aspergillus Genome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations.Nucleic Acids Res2014
25168586Rapid transcriptome sequencing of an invasive pest, the brown marmorated stink bug Halyomorpha halys.BMC Genomics2014
25168586Rapid transcriptome sequencing of an invasive pest, the brown marmorated stink bug Halyomorpha halys.BMC Genomics2014
24459263Draft Genome Sequence of Mortierella alpina Isolate CDC-B6842.Genome Announc2014
23845962De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis.Nat Protoc2013
23845962De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis.Nat Protoc2013
22080559The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources.Nucleic Acids Res2012
22719831Optimizing read mapping to reference genomes to determine composition and species prevalence in microbial communities.PLoS One2012
22080559The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources.Nucleic Acids Res2012
22719831Optimizing read mapping to reference genomes to determine composition and species prevalence in microbial communities.PLoS One2012
21677861The IGS Standard Operating Procedure for Automated Prokaryotic Annotation.Stand Genomic Sci2011
21677861The IGS Standard Operating Procedure for Automated Prokaryotic Annotation.Stand Genomic Sci2011
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Collaborators

Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 15
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 15
Broad Institute of MIT and Harvard
Co-authored papers 11
Co-authored papers 10
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 8
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 8
University of Maryland School of Medicine
Co-authored papers 7
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 7
Broad Institute of MIT and Harvard
Co-authored papers 7
University of Maryland School of Medicine, Institute for Genome Sciences
Co-authored papers 6
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 5
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 5
Broad Institute of MIT and Harvard
Co-authored papers 5
Allen Institute for Brain Science
Co-authored papers 4
University of California San Diego
Co-authored papers 4
University of Maryland College Park, College Park
Co-authored papers 4
Center for Epigenomics, University of California San Diego
Co-authored papers 4
Stanley Institute for Cognitive Genomics
Co-authored papers 4
Allen Institute for Brain Science
Co-authored papers 4
University of California Los Angeles
Co-authored papers 4
The Salk Institute for Biological Studies
Co-authored papers 4
Allen Institute for Brain Science
Co-authored papers 4
Ludwig Institute for Cancer Research, University of California San Diego
Co-authored papers 4
International Livestock Research Institute (ILRI)
Co-authored papers 3
Stanford University
Co-authored papers 3
University of Maryland School of Medicine, Institute for Genome Sciences
Co-authored papers 3
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J. Craig Venter Institute
Co-authored papers 3
Institut Pasteur, Universite Paris Cite
Co-authored papers 3