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| 36044359 | A Remarkable Expansion of Oligopeptide Transporter Genes in Rust Fungi (Pucciniales) Suggests a Specialization in Nutrient Acquisition for Obligate Biotrophy. | Phytopathology | 2023 |
| 37906027 | Near-complete genome sequence of <i>Lipomyces tetrasporous</i> NRRL Y-64009, an oleaginous yeast capable of growing on lignocellulosic hydrolysates. | Microbiol Resour Announc | 2023 |
| 37704968 | A scaffolded and annotated reference genome of giant kelp (Macrocystis pyrifera). | BMC Genomics | 2023 |
| 37982613 | Draft genome sequence of <i>Yarrowia lipolytica</i> NRRL Y-64008, an oleaginous yeast capable of growing on lignocellulosic hydrolysates. | Microbiol Resour Announc | 2023 |
| 37310219 | Terabase-Scale Coassembly of a Tropical Soil Microbiome. | Microbiol Spectr | 2023 |
| 37073784 | An HMM approach expands the landscape of sesquiterpene cyclases across the kingdom Fungi. | Microb Genom | 2023 |
| 36993855 | Two major chromosome evolution events with unrivaled conserved gene content in pomegranate. | Front Plant Sci | 2023 |
| 36879606 | Dataset of 143 metagenome-assembled genomes from the Arctic and Atlantic Oceans, including 21 for eukaryotic organisms. | Data Brief | 2023 |
| 36833289 | Genetic and Structural Diversity of Prokaryotic Ice-Binding Proteins from the Central Arctic Ocean. | Genes (Basel) | 2023 |
| 36930540 | Divergent Evolution of Early Terrestrial Fungi Reveals the Evolution of Mucormycosis Pathogenicity Factors. | Genome Biol Evol | 2023 |
| 35060603 | Kingdom-Wide Analysis of Fungal Protein-Coding and tRNA Genes Reveals Conserved Patterns of Adaptive Evolution. | Mol Biol Evol | 2022 |
| 35442079 | Near-Complete Genome Sequence of Zygosaccharomyces rouxii NRRL Y-64007, a Yeast Capable of Growing on Lignocellulosic Hydrolysates. | Microbiol Resour Announc | 2022 |
| 35484634 | Metagenome-assembled genomes of phytoplankton microbiomes from the Arctic and Atlantic Oceans. | Microbiome | 2022 |
| 36522135 | Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae. | Life Sci Alliance | 2022 |
| 36008619 | Wildfire-dependent changes in soil microbiome diversity and function. | Nat Microbiol | 2022 |
| 36251644 | Multiomics in the central Arctic Ocean for benchmarking biodiversity change. | PLoS Biol | 2022 |
| 33104790 | PhycoCosm, a comparative algal genomics resource. | Nucleic Acids Res | 2021 |
| 37744151 | A Genomic Catalog of Stress Response Genes in Anaerobic Fungi for Applications in Bioproduction. | Front Fungal Biol | 2021 |
| 33547391 | Genome-scale phylogenetic analyses confirm Olpidium as the closest living zoosporic fungus to the non-flagellated, terrestrial fungi. | Sci Rep | 2021 |
| 33906945 | Anaerobic gut fungi are an untapped reservoir of natural products. | Proc Natl Acad Sci U S A | 2021 |
| 33870123 | A single-cell genomics pipeline for environmental microbial eukaryotes. | iScience | 2021 |
| 33526884 | Genomic and functional analyses of fungal and bacterial consortia that enable lignocellulose breakdown in goat gut microbiomes. | Nat Microbiol | 2021 |
| 34893091 | Coâ¿¿cultivation of the anaerobic fungus Caecomyces churrovis with Methanobacterium bryantii enhances transcription of carbohydrate binding modules, dockerins, and pyruvate formate lyases on specific substrates. | Biotechnol Biofuels | 2021 |
| 34824476 | Persistence and plasticity in bacterial gene regulation. | Nat Methods | 2021 |
| 32207662 | Genome Sequence of the Chestnut Blight Fungus <i>Cryphonectria parasitica</i> EP155: A Fundamental Resource for an Archetypical Invasive Plant Pathogen. | Phytopathology | 2020 |
| 32107379 | A comparative genomics study of 23 Aspergillus species from section Flavi. | Nat Commun | 2020 |
| 32727924 | Phylogenomic Analyses of Non-Dikarya Fungi Supports Horizontal Gene Transfer Driving Diversification of Secondary Metabolism in the Amphibian Gastrointestinal Symbiont, <i>Basidiobolus</i>. | G3 (Bethesda) | 2020 |
| 31799118 | Genomic and proteomic biases inform metabolic engineering strategies for anaerobic fungi. | Metab Eng Commun | 2019 |
| 29317534 | Linking secondary metabolites to gene clusters through genome sequencing of six diverse <i>Aspergillus</i> species. | Proc Natl Acad Sci U S A | 2018 |
| 29876818 | Fungal Genome Annotation. | Methods Mol Biol | 2018 |
| 30297742 | Leveraging single-cell genomics to expand the fungal tree of life. | Nat Microbiol | 2018 |
| 30425417 | The gold-standard genome of <i>Aspergillus niger</i> NRRL 3 enables a detailed view of the diversity of sugar catabolism in fungi. | Stud Mycol | 2018 |
| 30349117 | Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri. | Nat Genet | 2018 |
| 30560908 | Uncovering secondary metabolite evolution and biosynthesis using gene cluster networks and genetic dereplication. | Sci Rep | 2018 |
| 29630596 | Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts. | PLoS Genet | 2018 |
| 28860010 | Conserved genomic collinearity as a source of broadly applicable, fast evolving, markers to resolve species complexes: A case study using the lichen-forming genus Peltigera section Polydactylon. | Mol Phylogenet Evol | 2017 |
| 28196534 | Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus. | Genome Biol | 2017 |
| 28481340 | Widespread adenine N6-methylation of active genes in fungi. | Nat Genet | 2017 |
| 28092920 | Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus. | Nature | 2017 |
| 28616073 | The transcription factor PDR-1 is a multi-functional regulator and key component of pectin deconstruction and catabolism in <i>Neurospora crassa</i>. | Biotechnol Biofuels | 2017 |
| 28555641 | A parts list for fungal cellulosomes revealed by comparative genomics. | Nat Microbiol | 2017 |
| 27238284 | Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication. | Curr Biol | 2016 |
| 27604469 | An expanded evaluation of protein function prediction methods shows an improvement in accuracy. | Genome Biol | 2016 |
| 27535936 | Comparative genomics of biotechnologically important yeasts. | Proc Natl Acad Sci U S A | 2016 |
| 25706625 | Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists. | Nat Genet | 2015 |
| 26441909 | Genome sequence of the plant growth promoting endophytic yeast Rhodotorula graminis WP1. | Front Microbiol | 2015 |
| 27358887 | Alternative splicing acting as a bridge in evolution. | Stem Cell Investig | 2015 |
| 26694319 | Correction: The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry. | PLoS Genet | 2015 |
| 26177194 | Widespread Polycistronic Transcripts in Fungi Revealed by Single-Molecule mRNA Sequencing. | PLoS One | 2015 |
| 25977457 | Phylogenomic Analyses Indicate that Early Fungi Evolved Digesting Cell Walls of Algal Ancestors of Land Plants. | Genome Biol Evol | 2015 |