Author details

Full Name

Mark Diekhans

Affiliation

Genomics Institute, University of California Santa Cruz

ORCID

Career Start Year

1999

Papers

H Index

Expertise

CM4AI Collaborator

Andrej Sali (CM4AI)

PMID	Paper Title	Journal Title	Published Year
36420891	The UCSC Genome Browser database: 2023 update.	Nucleic Acids Res	2023
36420896	GENCODE: reference annotation for the human and mouse genomes in 2023.	Nucleic Acids Res	2023
36420891	The UCSC Genome Browser database: 2023 update.	Nucleic Acids Res	2023
38077089	The Complete Sequence and Comparative Analysis of Ape Sex Chromosomes.	bioRxiv	2023
37612512	The complete sequence of a human Y chromosome.	Nature	2023
37066387	Single-cell long-read mRNA isoform regulation is pervasive across mammalian brain regions, cell types, and development.	bioRxiv	2023
37104599	Evolutionary constraint and innovation across hundreds of placental mammals.	Science	2023
37546854	Systematic assessment of long-read RNA-seq methods for transcript identification and quantification.	bioRxiv	2023
38077089	The Complete Sequence and Comparative Analysis of Ape Sex Chromosomes.	bioRxiv	2023
37612512	The complete sequence of a human Y chromosome.	Nature	2023
37546854	Systematic assessment of long-read RNA-seq methods for transcript identification and quantification.	bioRxiv	2023
37104599	Evolutionary constraint and innovation across hundreds of placental mammals.	Science	2023
37066387	Single-cell long-read mRNA isoform regulation is pervasive across mammalian brain regions, cell types, and development.	bioRxiv	2023
36420896	GENCODE: reference annotation for the human and mouse genomes in 2023.	Nucleic Acids Res	2023
34718705	The UCSC Genome Browser database: 2022 update.	Nucleic Acids Res	2022
35357917	Segmental duplications and their variation in a complete human genome.	Science	2022
34728536	Identification of high-confidence human poly(A) RNA isoform scaffolds using nanopore sequencing.	RNA	2022
34718705	The UCSC Genome Browser database: 2022 update.	Nucleic Acids Res	2022
35357917	Segmental duplications and their variation in a complete human genome.	Science	2022
34728536	Identification of high-confidence human poly(A) RNA isoform scaffolds using nanopore sequencing.	RNA	2022
33270111	GENCODE 2021.	Nucleic Acids Res	2021
33911273	Towards complete and error-free genome assemblies of all vertebrate species.	Nature	2021
33953399	A high-quality bonobo genome refines the analysis of hominid evolution.	Nature	2021
33833441	Author Correction: Dense sampling of bird diversity increases power of comparative genomics.	Nature	2021
33221922	The UCSC Genome Browser database: 2021 update.	Nucleic Acids Res	2021
33270111	GENCODE 2021.	Nucleic Acids Res	2021
33911273	Towards complete and error-free genome assemblies of all vertebrate species.	Nature	2021
33833441	Author Correction: Dense sampling of bird diversity increases power of comparative genomics.	Nature	2021
33953399	A high-quality bonobo genome refines the analysis of hominid evolution.	Nature	2021
33221922	The UCSC Genome Browser database: 2021 update.	Nucleic Acids Res	2021
32434849	AMELIE speeds Mendelian diagnosis by matching patient phenotype and genotype to primary literature.	Sci Transl Med	2020
32434849	AMELIE speeds Mendelian diagnosis by matching patient phenotype and genotype to primary literature.	Sci Transl Med	2020
31691824	UCSC Genome Browser enters 20th year.	Nucleic Acids Res	2020
32463100	halSynteny: a fast, easy-to-use conserved synteny block construction method for multiple whole-genome alignments.	Gigascience	2020
33177665	Dense sampling of bird diversity increases power of comparative genomics.	Nature	2020
33177663	Progressive Cactus is a multiple-genome aligner for the thousand-genome era.	Nature	2020
33335035	Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility.	Science	2020
32728065	Transcriptional activity and strain-specific history of mouse pseudogenes.	Nat Commun	2020
31691824	UCSC Genome Browser enters 20th year.	Nucleic Acids Res	2020
33335035	Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility.	Science	2020
33177665	Dense sampling of bird diversity increases power of comparative genomics.	Nature	2020
33177663	Progressive Cactus is a multiple-genome aligner for the thousand-genome era.	Nature	2020
32728065	Transcriptional activity and strain-specific history of mouse pseudogenes.	Nat Commun	2020
32463100	halSynteny: a fast, easy-to-use conserved synteny block construction method for multiple whole-genome alignments.	Gigascience	2020
30407534	The UCSC Genome Browser database: 2019 update.	Nucleic Acids Res	2019
31814998	Re-annotation of 191 developmental and epileptic encephalopathy-associated genes unmasks de novo variants in <i>SCN1A</i>.	NPJ Genom Med	2019
30407534	The UCSC Genome Browser database: 2019 update.	Nucleic Acids Res	2019
30357393	GENCODE reference annotation for the human and mouse genomes.	Nucleic Acids Res	2019
30379572	Whole-Genome Alignment and Comparative Annotation.	Annu Rev Anim Biosci	2019
31814998	Re-annotation of 191 developmental and epileptic encephalopathy-associated genes unmasks de novo variants in <i>SCN1A</i>.	NPJ Genom Med	2019

1 - 50 of 180

Marten J??ger

Charite Universitatsmedizin Berlin

Career Start Year 2010

Number of shared co-authors 1

Martin Kircher

Berlin Institute of Health (BIH) at Charite-Universitatsmedizin Berlin

Career Start Year 2008

Number of shared co-authors 11

Juan Caballero

European Bioinformatics Institute (EMBL-EBI)

Career Start Year 2008

Number of shared co-authors 5

Aakrosh Ratan

Center for Public Health Genomics, University of Virginia

Career Start Year 2008

Number of shared co-authors 29

Ziad Khan

Baylor College of Medicine

Career Start Year 2005

Number of shared co-authors 57

Alicia Hawes

Regeneron Pharmaceuticals Inc.

Career Start Year 2004

Number of shared co-authors 81

Jeffrey A Rosenfeld

Cancer Institute of New Jersey

Career Start Year 2004

Number of shared co-authors 27

Andrew R Jackson

Baylor College of Medicine

Career Start Year 2004

Number of shared co-authors 59

Justin Paschall

National Human Genome Research Institute, National Institutes of Health

Career Start Year 2004

Number of shared co-authors 11

John A Capra

Bakar Computational Health Sciences Institute, University of California san francisco

Career Start Year 2003

Number of shared co-authors 5

Christie L Kovar

Baylor College of Medicine

Career Start Year 2002

Number of shared co-authors 74

Yaron S Butterfield

Brain Tumour Foundation of Canada

Career Start Year 2002

Number of shared co-authors 26

Timo Lassmann

Telethon Kids Institute, University of Western Australia

Career Start Year 2002

Number of shared co-authors 15

Tyler Alioto

Universitat de Barcelona (UB)

Career Start Year 2001

Number of shared co-authors 70

Brent S Pedersen

Center for Molecular Medicine, University Medical Center Utrecht

Career Start Year 2001

Number of shared co-authors 8

Martin C Frith

Artificial Intelligence Research Center, University of Tokyo

Career Start Year 2001

Number of shared co-authors 11

Michael Brudno

University of Toronto

Career Start Year 2000

Number of shared co-authors 60

Martin S Taylor

Institute of Genetics and Cancer, University of Edinburgh

Career Start Year 2000

Number of shared co-authors 57

Xiangqun H Zheng

Zibo First Hospital

Career Start Year 1999

Number of shared co-authors 27

Sarah J Wheelan

National Human Genome Research Institute, National Institutes of Health

Career Start Year 1998

Number of shared co-authors 22

Vineet Bafna

University of California San Diego

Career Start Year 1998

Number of shared co-authors 19

Colin A Semple

Institute of Genetics and Cancer, University of Edinburgh

Career Start Year 1997

Number of shared co-authors 15

Jared C Roach

Institute for Systems Biology

Career Start Year 1995

Number of shared co-authors 6

Elizabeth A Worthey

Heersink School of Medicine, The University of Alabama at Birmingham

Career Start Year 1995

Number of shared co-authors 12

Mark Yandell

University of Utah

Career Start Year 1994

Number of shared co-authors 55

Terry Gaasterland

Scripps Institution of Oceanography, University of California San Diego

Career Start Year 1994

Number of shared co-authors 30

Winston Hide

Harvard Medical School

Career Start Year 1991

Number of shared co-authors 25

Samuel Levy

Bluestar Genomics Inc.

Career Start Year 1991

Number of shared co-authors 7

Lincoln Stein

Ontario Institute for Cancer Research, University Avenue

Career Start Year 1986

Number of shared co-authors 75

Kelly A Frazer

University of California, USA Institute for Genomic Medicine

Career Start Year 1967

Number of shared co-authors 37

row(s) 1 - 30 of 30

David Haussler

Genomics Institute, University of California Santa Cruz

Co-authored papers 55

William James Kent

Co-authored papers 29

Benedict Paten

UC Santa Cruz Genomics Institute, University of California

Co-authored papers 24

Robert M Kuhn

Genomics Institute, University of California Santa Cruz

Co-authored papers 22

Hiram Clawson

Co-authored papers 21

Angie S Hinrichs

Co-authored papers 21

Ann S Zweig

Co-authored papers 20

Kate R Rosenbloom

Co-authored papers 20

Rachel A Harte

Co-authored papers 20

Galt P Barber

Genomics Institute, University of California Santa Cruz

Co-authored papers 20

Donna Karolchik

Co-authored papers 18

Adam Frankish

Co-authored papers 15

Ian T Fiddes

Liver Center and Diabetes Center, University of California san francisco

Co-authored papers 13

Brian T Lee

Genomics Institute, University of California Santa Cruz

Co-authored papers 12

Maximilian Haeussler

Genomics Institute, University of California Santa Cruz

Co-authored papers 12

Melissa S Cline

Genomics Institute, University of California Santa Cruz

Co-authored papers 11

Robert Baertsch

Center for Biomolecular Science and Engineering, University of California

Co-authored papers 11

Jennifer Harrow

Co-authored papers 10

Tim Hubbard

Co-authored papers 10

Brooke Rhead

Co-authored papers 9

Paul Flicek

European Bioinformatics Institute

Co-authored papers 9

Katrina Learned

Co-authored papers 9

Mark Gerstein

Yale University

Co-authored papers 8

Rachel Karchin

Johns Hopkins University

Co-authored papers 8

Belinda Giardine

Co-authored papers 8

Evan E Eichler

University of Washington

Co-authored papers 7

Roderic Guig??

Barcelona Institute of Science and Technology

Co-authored papers 7

Kayla E Smith

Co-authored papers 6

Mario Stanke

Institut fur Mathematik und Informatik, Universitat Greifswald

Co-authored papers 6

Mary Goldman

UC Santa Cruz Genomics Institute, University of California

Co-authored papers 6

1 - 30

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