Author details

Full Name

Sanjay J Swamidass

Affiliation

Washington University School of Medicine

ORCID

Career Start Year

2005

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
33095721	'Black Box' to 'Conversational' Machine Learning: Ondansetron Reduces Risk of Hospital-Acquired Venous Thromboembolism.	IEEE J Biomed Health Inform	2021
32437779	Dual mechanisms suppress meloxicam bioactivation relative to sudoxicam.	Toxicology	2020
32040319	The Metabolic Rainbow: Deep Learning Phase I Metabolism in Five Colors.	J Chem Inf Model	2020
32881497	Metabolic Forest: Predicting the Diverse Structures of Drug Metabolites.	J Chem Inf Model	2020
32525671	XenoNet: Inference and Likelihood of Intermediate Metabolite Formation.	J Chem Inf Model	2020
30510237	Accounting for proximal variants improves neoantigen prediction.	Nat Genet	2019
31688587	Precision Medicine in Pancreatic Disease-Knowledge Gaps and Research Opportunities: Summary of a National Institute of Diabetes and Digestive and Kidney Diseases Workshop.	Pancreas	2019
31304741	A Time-Embedding Network Models the Ontogeny of 23 Hepatic Drug Metabolizing Enzymes.	Chem Res Toxicol	2019
30925039	CYP2C19 and 3A4 Dominate Metabolic Clearance and Bioactivation of Terbinafine Based on Computational and Experimental Approaches.	Chem Res Toxicol	2019
30287923	Standard operating procedure for somatic variant refinement of sequencing data with paired tumor andÂ normal samples.	Genet Med	2019
29218919	The diversity and disparity in biomedical informatics (DDBI) workshop.	Pac Symp Biocomput	2018
30076845	Lamisil (terbinafine) toxicity: Determining pathways to bioactivation through computational and experimental approaches.	Biochem Pharmacol	2018
29994669	Deep Learning Global Glomerulosclerosis in Transplant Kidney Frozen Sections.	IEEE Trans Med Imaging	2018
29990427	Modeling Small-Molecule Reactivity Identifies Promiscuous Bioactive Compounds.	J Chem Inf Model	2018
30397337	A deep learning approach to automate refinement of somatic variant calling from cancer sequencing data.	Nat Genet	2018
29618526	Opportunities and obstacles for deep learning in biology and medicine.	J R Soc Interface	2018
29392176	Learning a Local-Variable Model of Aromatic and Conjugated Systems.	ACS Cent Sci	2018
29355304	Computationally Assessing the Bioactivation of Drugs by N-Dealkylation.	Chem Res Toxicol	2018
28099803	Deep Learning to Predict the Formation of Quinone Species in Drug Metabolism.	Chem Res Toxicol	2017
28256829	Computational Approach to Structural Alerts: Furans, Phenols, Nitroaromatics, and Thiophenes.	Chem Res Toxicol	2017
28379348	BEESEM: estimation of binding energy models using HT-SELEX data.	Bioinformatics	2017
25832646	A survey of current trends in computational drug repositioning.	Brief Bioinform	2016
27618449	Unsupervised detection of cancer driver mutations with parsimony-guided learning.	Nat Genet	2016
27610414	Modeling Reactivity to Biological Macromolecules with a Deep Multitask Network.	ACS Cent Sci	2016
27649847	Erratum: Inhibition of DNA Methyltransferases Blocks Mutant Huntingtin-Induced Neurotoxicity.	Sci Rep	2016
27324196	A simple model predicts UGT-mediated metabolism.	Bioinformatics	2016
27467575	Open Source Drug Discovery with the Malaria Box Compound Collection for Neglected Diseases and Beyond.	PLoS Pathog	2016
27516062	Inhibition of DNA Methyltransferases Blocks Mutant Huntingtin-Induced Neurotoxicity.	Sci Rep	2016
25411327	XenoSite server: a web-available site of metabolism prediction tool.	Bioinformatics	2015
27162970	Modeling Epoxidation of Drug-like Molecules with a Deep Machine Learning Network.	ACS Cent Sci	2015
26719774	Accurate and efficient target prediction using a potency-sensitive influence-relevance voter.	J Cheminform	2015
26209800	Statistically identifying tumor suppressors and oncogenes from pan-cancer genome-sequencing data.	Bioinformatics	2015
26223616	Education: Initiatives to bridge faith and science.	Nature	2015
25871613	Improved Prediction of CYP-Mediated Metabolism with Chemical Fingerprints.	J Chem Inf Model	2015
25681442	Subcellular localization and Ser-137 phosphorylation regulate tumor-suppressive activity of profilin-1.	J Biol Chem	2015
25697821	Extending P450 site-of-metabolism models with region-resolution data.	Bioinformatics	2015
25714898	Securely measuring the overlap between private datasets with cryptosets.	PLoS One	2015
25742281	Site of reactivity models predict molecular reactivity of diverse chemicals with glutathione.	Chem Res Toxicol	2015
24289228	Sharing chemical relationships does not reveal structures.	J Chem Inf Model	2014
24943138	Bigger data, collaborative tools and the future of predictive drug discovery.	J Comput Aided Mol Des	2014
24563424	Combined Analysis of Phenotypic and Target-Based Screening in Assay Networks.	J Biomol Screen	2014
23063929	Accounting for noise when clustering biological data.	Brief Bioinform	2013
24303328	Drug repositioning from the combined evaluation of phenotypic and target-based screening.	AMIA Jt Summits Transl Sci Proc	2013
24224933	XenoSite: accurately predicting CYP-mediated sites of metabolism with neural networks.	J Chem Inf Model	2013
23918250	Scaffold network generator: a tool for mining molecular structures.	Bioinformatics	2013
23585219	Managing missing measurements in small-molecule screens.	J Comput Aided Mol Des	2013
23256806	Using economic optimization to design high-throughput screens.	Future Med Chem	2013
23242264	RS-WebPredictor: a server for predicting CYP-mediated sites of metabolism on drug-like molecules.	Bioinformatics	2013
22117901	Utility-aware screening with clique-oriented prioritization.	J Chem Inf Model	2012
22693105	Automatically detecting workflows in PubChem.	J Biomol Screen	2012

1 - 50 of 68

Giovanni Bocci

The University of New Mexico School of Medicine

Career Start Year 2016

Number of shared co-authors 0

Zhaoping Xiong

Huawei Cloud Computing Technologies Co.

Career Start Year 2014

Number of shared co-authors 0

Shraddha Thakkar

Center for Drug Evaluations and Research (CDER)

Career Start Year 2013

Number of shared co-authors 0

Wail Ba-Alawi

Princess Margaret Cancer Centre, University Health Network, University Ave.

Career Start Year 2013

Number of shared co-authors 0

Nicholas P Tatonetti

Columbia Universtiy College of Physicians and Surgeons

Career Start Year 2009

Number of shared co-authors 2

Bin Chen

Jiangsu University

Career Start Year 2009

Number of shared co-authors 1

Michael J Keiser

Institute for Neurodegenerative Diseases, University of California san francisco

Career Start Year 2007

Number of shared co-authors 1

Evan E Bolton

National Center for Biotechnology Information, National Institutes of Health

Career Start Year 2007

Number of shared co-authors 1

Ola Spjuth

Department of Pharmaceutical Biosciences, Uppsala University

Career Start Year 2006

Number of shared co-authors 1

Steve O'Hagan

The Manchester Institute of Biotechnology, The University of Manchester

Career Start Year 2004

Number of shared co-authors 0

Egon L Willighagen

Maastricht University

Career Start Year 2003

Number of shared co-authors 5

Anang A Shelat

St. Jude Children's Research Hospital

Career Start Year 2003

Number of shared co-authors 6

Anna Gaulton

European Bioinformatics Institute (EMBL-EBI)

Career Start Year 2002

Number of shared co-authors 2

Scott Boyer

Swedish Toxicology Sciences Research Center, Karolinska Institutet

Career Start Year 2002

Number of shared co-authors 0

Noel Southall

National Center for Advancing Translational Sciences, National Institutes of Health

Career Start Year 2002

Number of shared co-authors 3

Gerald H Lushington

Inc. 16 Dekalb Pike

Career Start Year 2002

Number of shared co-authors 0

John J Irwin

Department of Pharmaceutical Chemistry, University of California san francisco

Career Start Year 2002

Number of shared co-authors 0

Stephan C Sch??rer

Institute for Data Science and Computing, University of Miami

Career Start Year 1998

Number of shared co-authors 6

Vlado Dan????k

Broad Institute

Career Start Year 1997

Number of shared co-authors 3

Andrew L Hopkins

University of Dundee

Career Start Year 1995

Number of shared co-authors 2

Cristian G Bologa

University of New Mexico School of Medicine

Career Start Year 1995

Number of shared co-authors 2

Tudor I Oprea

Expert Systems Inc.

Career Start Year 1993

Number of shared co-authors 3

Arya Ajay

National Center for Advancing Translational Science, 9800 Medical Center Drive

Career Start Year 1993

Number of shared co-authors 2

David J Wild

Indiana University Bloomington

Career Start Year 1992

Number of shared co-authors 1

Eric Gifford

Merck Research Laboratories, Merck & Co.

Career Start Year 1991

Number of shared co-authors 0

Michael S Lajiness

Lilly Research Laboratories

Career Start Year 1989

Number of shared co-authors 1

John P Overington

Institute of Cardiovascular Science, University College London

Career Start Year 1988

Number of shared co-authors 6

Andrew R Leach

European Bioinformatics Institute (EMBL-EBI)

Career Start Year 1987

Number of shared co-authors 2

Christoph Steinbeck

Institute for Inorganic and Analytical Chemistry, Friedrich Schiller University Jena

Career Start Year 1986

Number of shared co-authors 1

Russ B Altman

Stanford University

Career Start Year 1982

Number of shared co-authors 3

row(s) 1 - 30 of 30

Matthew K Matlock

Washington University in St. Louis

Co-authored papers 14

Joshua A Bittker

Co-authored papers 4

Obi L Griffith

Washington University

Co-authored papers 4

Paul A Clemons

Broad Institute

Co-authored papers 3

Malachi Griffith

Washington University

Co-authored papers 3

Erica K Barnell

McDonnell Genome Institute, Washington University School of Medicine

Co-authored papers 2

Ting Wang

Washington University School of Medicine

Co-authored papers 2

Peter Ronning

Washington University School of Medicine

Co-authored papers 2

Runjun D Kumar

Co-authored papers 2

Ramaswamy Govindan

Siteman Cancer Center, Washington University School of Medicine

Co-authored papers 2

Elaine R Mardis

The Ohio State University

Co-authored papers 2

Alex H Wagner

Iowa State University, Mayo Clinic, Nationwide Children's Hospital, The Ohio State University College of Medicine, University of Iowa, Washington University in Saint Louis

Co-authored papers 2

Ron Bose

Washington University School of Medicine

Co-authored papers 2

Xiaoyun Xing

Co-authored papers 2

Zhiyong Lu

National Center for Biotechnology Information, National Institutes of Health.

Co-authored papers 2

Jasreet Hundal

McDonnell Genome Institute, Washington University School of Medicine

Co-authored papers 2