Author details

Full Name

Anthony Mathelier

Affiliation

University of Oslo

ORCID

Career Start Year

2010

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37962376	JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles.	Nucleic Acids Res	2024
37166953	OnTarget: in silico design of MiniPromoters for targeted delivery of expression.	Nucleic Acids Res	2023
35194199	Expressed prognostic biomarkers for primary prostate cancer independent of multifocality and transcriptome heterogeneity.	Cancer Gene Ther	2022
35440061	Pioneer transcription factors are associated with the modulation of DNA methylation patterns across cancers.	Epigenetics Chromatin	2022
36477895	Cis-regulatory mutations associate with transcriptional and post-transcriptional deregulation of gene regulatory programs in cancers.	Nucleic Acids Res	2022
36451166	MoDLE: high-performance stochastic modeling of DNA loop extrusion interactions.	Genome Biol	2022
34850907	JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles.	Nucleic Acids Res	2022
33135764	BiasAway: command-line and web server to generate nucleotide composition-matched DNA background sequences.	Bioinformatics	2021
33531684	Human MiniPromoters for ocular-rAAV expression in ON bipolar, cone, corneal, endothelial, MÃ¼ller glial, and PAX6 cells.	Gene Ther	2021
33863803	Human White Adipose Tissue Displays Selective Insulin Resistance in the Obese State.	Diabetes	2021
34174819	UniBind: maps of high-confidence direct TF-DNA interactions across nine species.	BMC Genomics	2021
31598695	MirGeneDB 2.0: the metazoan microRNA complement.	Nucleic Acids Res	2020
31701148	JASPAR 2020: update of the open-access database of transcription factor binding profiles.	Nucleic Acids Res	2020
31642479	MirGeneDB 2.0: the metazoan microRNA complement.	Nucleic Acids Res	2020
31624847	Beware the Jaccard: the choice of similarity measure is important and non-trivial in genomic colocalisation analysis.	Brief Bioinform	2020
30517703	A map of direct TF-DNA interactions in the human genome.	Nucleic Acids Res	2019
30062914	New MiniPromoter Ple345 (NEFL) Drives Strong and Specific Expression in Retinal Ganglion Cells of Mouse and Primate Retina.	Hum Gene Ther	2019
31533632	Identification of novel cerebellar developmental transcriptional regulators with motif activity analysis.	BMC Genomics	2019
31251803	A map of direct TF-DNA interactions in the human genome.	Nucleic Acids Res	2019
31149037	High OGT activity is essential for MYC-driven proliferation of prostate cancer cells.	Theranostics	2019
29161433	JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework.	Nucleic Acids Res	2018
30103339	Computational Analysis of Transcriptional Regulation Sites at the HTT Gene Locus.	J Huntingtons Dis	2018
30040077	MANTA2, update of the Mongo database for the analysis of transcription factor binding site alterations.	Sci Data	2018
30169995	Super-enhancers are transcriptionally more active and cell type-specific than stretch enhancers.	Epigenetics	2018
29871881	Human Enhancers Harboring Specific Sequence Composition, Activity, and Genome Organization Are Linked to the Immune Response.	Genetics	2018
29510665	Characterization of the human RFX transcription factor family by regulatory and target gene analysis.	BMC Genomics	2018
29650529	Put science first and formatting later.	EMBO Rep	2018
29253085	JASPAR RESTful API: accessing JASPAR data from any programming language.	Bioinformatics	2018
29126285	ReMap 2018: an updated atlas of regulatory regions from an integrative analysis of DNA-binding ChIP-seq experiments.	Nucleic Acids Res	2018
29140473	JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework.	Nucleic Acids Res	2018
27794045	Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals.	Nucleic Acids Res	2017
29123100	DNA methylation at enhancers identifies distinct breast cancer lineages.	Nat Commun	2017
28569135	Intervene: a tool for intersection and visualization of multiple gene or genomic region sets.	BMC Bioinformatics	2017
28829439	An integrated expression atlas of miRNAs and their promoters in human and mouse.	Nat Biotechnol	2017
26953320	DNA methylation profiling in human Huntington's disease brain.	Hum Mol Genet	2016
26531826	JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles.	Nucleic Acids Res	2016
27857184	YY1 binding association with sex-biased transcription revealed through X-linked transcript levels and allelic binding analyses.	Sci Rep	2016
27334471	CAGEd-oPOSSUM: motif enrichment analysis from CAGE-derived TSSs.	Bioinformatics	2016
27199372	DeepCAGE transcriptomics identify HOXD10 as a transcription factor regulating lymphatic endothelial responses to VEGF-C.	J Cell Sci	2016
27556059	PAX6 MiniPromoters drive restricted expression from rAAV in the adult mouse retina.	Mol Ther Methods Clin Dev	2016
27492288	Evaluating the impact of single nucleotide variants on transcription factor binding.	Nucleic Acids Res	2016
27546793	DNA Shape Features Improve Transcription Factor Binding Site Predictions InÂ Vivo.	Cell Syst	2016
25637093	Identification of altered cis-regulatory elements in human disease.	Trends Genet	2015
26549461	DeepCAGE Transcriptomics Reveal an Important Role of the Transcription Factor MAFB in the Lymphatic Endothelium.	Cell Rep	2015
25903198	Cis-regulatory somatic mutations and gene-expression alteration in B-cell lymphomas.	Genome Biol	2015
24194598	JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles.	Nucleic Acids Res	2014
25243170	The potential of microRNAs in personalized medicine against cancers.	Biomed Res Int	2014
24927817	Improving analysis of transcription factor binding sites within ChIP-Seq data based on topological motif enrichment.	BMC Genomics	2014
24670764	A promoter-level mammalian expression atlas.	Nature	2014
24214955	TFBSshape: a motif database for DNA shape features of transcription factor binding sites.	Nucleic Acids Res	2014

1 - 50 of 55

Kai Zhang

University of California

Career Start Year 2011

Number of shared co-authors 0

Alan P Boyle

University of Michigan ann arbor

Career Start Year 2008

Number of shared co-authors 3

Chongzhi Zang

Center for Public Health Genomics, University of Virginia

Career Start Year 2008

Number of shared co-authors 0

Ally Yang

University of Toronto

Career Start Year 2008

Number of shared co-authors 2

Nathan Sheffield (CM4AI)

University of Virginia

Career Start Year 2007

Number of shared co-authors 8

Altuna Akalin

Berlin Institute for Medical Systems Biology

Career Start Year 2006

Number of shared co-authors 67

Songjoon Baek

Center for Cancer Research, National Cancer Institute

Career Start Year 2006

Number of shared co-authors 2

Stephen C J Parker

University of Michigan ann arbor

Career Start Year 2006

Number of shared co-authors 5

Shane Neph

Altius Institute for Biomedical Sciences

Career Start Year 2006

Number of shared co-authors 7

David L Corcoran

The University of North Carolina at Chapel Hill

Career Start Year 2005

Number of shared co-authors 1

Jun S Song

University of Illinois at Urbana-Champaign

Career Start Year 2005

Number of shared co-authors 2

Anshul Kundaje

Stanford University.

Career Start Year 2004

Number of shared co-authors 5

Michael M Hoffman

University of Toronto

Career Start Year 2004

Number of shared co-authors 1

Shyam Prabhakar

Genome Institute of Singapore (GIS)

Career Start Year 2004

Number of shared co-authors 3

Matthew T Weirauch

University of Cincinnati College of Medicine

Career Start Year 2003

Number of shared co-authors 9

Valer Gotea

National Human Genome Research Institute, National Institutes of Health

Career Start Year 2003

Number of shared co-authors 0

Quaid Morris

Sloan Kettering Institute

Career Start Year 2003

Number of shared co-authors 2

Manolis Kellis

Massachusetts Institute of Technology

Career Start Year 2003

Number of shared co-authors 7

Zhaohui S Qin

Emory University

Career Start Year 2002

Number of shared co-authors 0

Michael J Buck

Jacobs School of Medicine and Biomedical Sciences, University at Buffalo

Career Start Year 2002

Number of shared co-authors 0

Zhaolei Zhang

University of Toronto

Career Start Year 2002

Number of shared co-authors 0

Ting Wang

Washington University School of Medicine

Career Start Year 2001

Number of shared co-authors 2

Saurabh Sinha

Georgia Institute of Technology

Career Start Year 2000

Number of shared co-authors 4

Terrence S Furey

University of North Carolina at Chapel Hill

Career Start Year 2000

Number of shared co-authors 7

Uwe Ohler

Humboldt University

Career Start Year 1999

Number of shared co-authors 5

Kai Tan

University of Pennsylvania

Career Start Year 1999

Number of shared co-authors 59

Laura Elnitski

National Human Genome Research Institute

Career Start Year 1997

Number of shared co-authors 8

Panayiotis V Benos

University of Florida

Career Start Year 1996

Number of shared co-authors 1

Timothy R Hughes

University of Toronto

Career Start Year 1992

Number of shared co-authors 3

Zhiping Weng

University of Massachusetts Medical School

Career Start Year 1992

Number of shared co-authors 10

row(s) 1 - 30 of 30

Wyeth W Wasserman

BC Children's Hospital Research Institute, University of British Columbia

Co-authored papers 29

Oriol Fornes

BC Children's Hospital Research Institute, University of British Columbia

Co-authored papers 11

David J Arenillas

BC Children's Hospital Research Institute, University of British Columbia

Co-authored papers 11

Albin Sandelin

University of Copenhagen

Co-authored papers 10

Alistair R R Forrest

RIKEN Center for Integrative Medical Sciences

Co-authored papers 8

Boris Lenhard

MRC London Institute of Medical Sciences

Co-authored papers 8

Hideya Kawaji

RIKEN Center for Integrative Medical Sciences

Co-authored papers 8

Piero Carninci

RIKEN Center for Integrative Medical Sciences

Co-authored papers 7

Yoshihide Hayashizaki

Center for Integrative Medical Sciences

Co-authored papers 7

Timo Lassmann

Telethon Kids Institute, University of Western Australia

Co-authored papers 7

Carsten O Daub

International Institute of Molecular and Cell Biology in Warsaw

Co-authored papers 6

Marina Lizio

Cerevance Ltd

Co-authored papers 5

Masayoshi Itoh

RIKEN Center for Integrative Medical Sciences

Co-authored papers 5

Erik Arner

RIKEN Center for Integrative Medical Sciences (IMS)

Co-authored papers 5

Michael Detmar

Institute of Pharmaceutical Sciences, ETH Zurich

Co-authored papers 4

Jay W Shin

Genome Institute of Singapore (GIS)

Co-authored papers 4

Dan Goldowitz

University of British Columbia

Co-authored papers 3

Diana Domanska

University of Oslo

Co-authored papers 3

Geir Kjetil Sandve

University of Oslo

Co-authored papers 3

Christopher J Mungall

International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences

Co-authored papers 3

Niklas Mejhert

Karolinska Institutet

Co-authored papers 3

Jessica Severin

Center for Integrative Medical Sciences

Co-authored papers 3

Peter Arner

Karolinska Institutet at Karolinska Hospital-Huddinge

Co-authored papers 3

Alessandra Carbone

Co-authored papers 3