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Author Details

Neil Swainston
Institute of Systems, University of Liverpool
2006
62
29
PMIDPaper TitleJournal TitlePublished Year
36759590EnzymeML: seamless data flow and modeling of enzymatic data.Nat Methods2023
36759590EnzymeML: seamless data flow and modeling of enzymatic data.Nat Methods2023
34890097EnzymeML-a data exchange format for biocatalysis and enzymology.FEBS J2022
36038542The automated Galaxy-SynBioCAD pipeline for synthetic biology design and engineering.Nat Commun2022
35727444SpeedyGenesXL: an Automated, High-Throughput Platform for the Preparation of Bespoke Ultralarge Variant Libraries for Directed Evolution.Methods Mol Biol2022
34890097EnzymeML-a data exchange format for biocatalysis and enzymology.FEBS J2022
35727444SpeedyGenesXL: an Automated, High-Throughput Platform for the Preparation of Bespoke Ultralarge Variant Libraries for Directed Evolution.Methods Mol Biol2022
36038542The automated Galaxy-SynBioCAD pipeline for synthetic biology design and engineering.Nat Commun2022
34944436MassGenie: A Transformer-Based Deep Learning Method for Identifying Small Molecules from Their Mass Spectra.Biomolecules2021
34944436MassGenie: A Transformer-Based Deep Learning Method for Identifying Small Molecules from Their Mass Spectra.Biomolecules2021
32265506The RESOLUTE consortium: unlocking SLC transporters for drug discovery.Nat Rev Drug Discov2020
32265506The RESOLUTE consortium: unlocking SLC transporters for drug discovery.Nat Rev Drug Discov2020
32335188Rapid prototyping of microbial production strains for the biomanufacture of potential materials monomers.Metab Eng2020
33195815Engineering <i>Escherichia coli</i> towards <i>de novo</i> production of gatekeeper (2<i>S</i>)-flavanones: naringenin, pinocembrin, eriodictyol and homoeriodictyol.Synth Biol (Oxf)2020
32751155VAE-Sim: A Novel Molecular Similarity Measure Based on a Variational Autoencoder.Molecules2020
33290527Deep learning and generative methods in cheminformatics and chemical biology: navigating small molecule space intelligently.Biochem J2020
32845085SBML Level 3: an extensible format for the exchange and reuse of biological models.Mol Syst Biol2020
33431037DeepGraphMolGen, a multi-objective, computational strategy for generating molecules with desirable properties: a graph convolution and reinforcement learning approach.J Cheminform2020
33431037DeepGraphMolGen, a multi-objective, computational strategy for generating molecules with desirable properties: a graph convolution and reinforcement learning approach.J Cheminform2020
33195815Engineering <i>Escherichia coli</i> towards <i>de novo</i> production of gatekeeper (2<i>S</i>)-flavanones: naringenin, pinocembrin, eriodictyol and homoeriodictyol.Synth Biol (Oxf)2020
33290527Deep learning and generative methods in cheminformatics and chemical biology: navigating small molecule space intelligently.Biochem J2020
32845085SBML Level 3: an extensible format for the exchange and reuse of biological models.Mol Syst Biol2020
32751155VAE-Sim: A Novel Molecular Similarity Measure Based on a Variational Autoencoder.Molecules2020
32335188Rapid prototyping of microbial production strains for the biomanufacture of potential materials monomers.Metab Eng2020
30563328Machine Learning of Designed Translational Control Allows Predictive Pathway Optimization in Escherichia coli.ACS Synth Biol2019
32995546Highly multiplexed, fast and accurate nanopore sequencing for verification of synthetic DNA constructs and sequence libraries.Synth Biol (Oxf)2019
30563328Machine Learning of Designed Translational Control Allows Predictive Pathway Optimization in Escherichia coli.ACS Synth Biol2019
31132850GeneORator: An Effective Strategy for Navigating Protein Sequence Space More Efficiently through Boolean OR-Type DNA Libraries.ACS Synth Biol2019
31417136An automated pipeline for the screening of diverse monoterpene synthase libraries.Sci Rep2019
32995546Highly multiplexed, fast and accurate nanopore sequencing for verification of synthetic DNA constructs and sequence libraries.Synth Biol (Oxf)2019
31417136An automated pipeline for the screening of diverse monoterpene synthase libraries.Sci Rep2019
31132850GeneORator: An Effective Strategy for Navigating Protein Sequence Space More Efficiently through Boolean OR-Type DNA Libraries.ACS Synth Biol2019
29425325Selenzyme: enzyme selection tool for pathway design.Bioinformatics2018
30173773Fast and Flexible Synthesis of Combinatorial Libraries for Directed Evolution.Methods Enzymol2018
30173770Multifragment DNA Assembly of Biochemical Pathways via Automated Ligase Cycling Reaction.Methods Enzymol2018
29928800Rationalizing Context-Dependent Performance of Dynamic RNA Regulatory Devices.ACS Synth Biol2018
29949952PartsGenie: an integrated tool for optimizing and sharing synthetic biology parts.Bioinformatics2018
30271948An automated Design-Build-Test-Learn pipeline for enhanced microbial production of fine chemicals.Commun Biol2018
29670271A repository for quality-assured data on enzyme activity.Nature2018
29750129Engineering the "Missing Link" in Biosynthetic (-)-Menthol Production: Bacterial Isopulegone Isomerase.ACS Catal2018
29425325Selenzyme: enzyme selection tool for pathway design.Bioinformatics2018
29498804STRENDA DB: enabling the validation and sharing of enzyme kinetics data.FEBS J2018
29928800Rationalizing Context-Dependent Performance of Dynamic RNA Regulatory Devices.ACS Synth Biol2018
30173773Fast and Flexible Synthesis of Combinatorial Libraries for Directed Evolution.Methods Enzymol2018
30173770Multifragment DNA Assembly of Biochemical Pathways via Automated Ligase Cycling Reaction.Methods Enzymol2018
29949952PartsGenie: an integrated tool for optimizing and sharing synthetic biology parts.Bioinformatics2018
30271948An automated Design-Build-Test-Learn pipeline for enhanced microbial production of fine chemicals.Commun Biol2018
29670271A repository for quality-assured data on enzyme activity.Nature2018
29498804STRENDA DB: enabling the validation and sharing of enzyme kinetics data.FEBS J2018
29750129Engineering the "Missing Link" in Biosynthetic (-)-Menthol Production: Bacterial Isopulegone Isomerase.ACS Catal2018
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Collaborators

Novo Nordisk Foundation Centre for Biosustainability, Technical University of Denmark
Co-authored papers 34
Manchester Institute of Biotechnology, University of Manchester
Co-authored papers 11
University of Cambridge
Co-authored papers 7
Co-authored papers 7
Institute for Systems Biology
Co-authored papers 6
The University of Manchester
Co-authored papers 5
Strathclyde Institute of Pharmacy and Biomedical Sciences, University of Strathclyde
Co-authored papers 5
University of Cape Town
Co-authored papers 5
Babraham Institute
Co-authored papers 5
University of Manchester
Co-authored papers 4
University of Manchester
Co-authored papers 4
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European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 4
University of California San Diego
Co-authored papers 4
Institute for Implementation Science in Health Care, University of Zurich
Co-authored papers 3
Institute of Systems, University of Liverpool
Co-authored papers 3
The Manchester Institute of Biotechnology, The University of Manchester
Co-authored papers 3
University of Manchester
Co-authored papers 3
Heidelberg Institute for Theoretical Studies (HITS gGmbH)
Co-authored papers 3
Institute for Inorganic and Analytical Chemistry, Friedrich Schiller University Jena
Co-authored papers 2
Institute of Systems, University of Liverpool
Co-authored papers 2
European Bioinformatics Institute (EMBL-EBI)
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Aix Marseille University CNRS
Co-authored papers 2
Chalmers University of Technology
Co-authored papers 2
University of Manchester
Co-authored papers 2
Leiden Institute of Advanced Computer Science, Leiden University
Co-authored papers 1
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Oxford e-Research Centre, University of Oxford
Co-authored papers 1
EMBL's European Bioinformatics Institute (EMBL-EBI)
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