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Author Details

Michihira Tagami
RIKEN Center for Integrative Medical Sciences
2005
27
14
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37817005OVCH1 Antisense RNA 1 is differentially expressed between non-frail and frail old adults.Geroscience2024
37817005OVCH1 Antisense RNA 1 is differentially expressed between non-frail and frail old adults.Geroscience2024
35961773Deep sequencing of short capped RNAs reveals novel families of noncoding RNAs.Genome Res2022
35961773Deep sequencing of short capped RNAs reveals novel families of noncoding RNAs.Genome Res2022
35387384High quality genome assembly of the anhydrobiotic midge provides insights on a single chromosome-based emergence of extreme desiccation tolerance.NAR Genom Bioinform2022
36577377Antisense-oligonucleotide-mediated perturbation of long non-coding RNA reveals functional features in stem cells and across cell types.Cell Rep2022
35387384High quality genome assembly of the anhydrobiotic midge provides insights on a single chromosome-based emergence of extreme desiccation tolerance.NAR Genom Bioinform2022
36577377Antisense-oligonucleotide-mediated perturbation of long non-coding RNA reveals functional features in stem cells and across cell types.Cell Rep2022
33211864FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs.Nucleic Acids Res2021
34078885Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network.Nat Commun2021
33931666Nanopore sequencing reveals TACC2 locus complexity and diversity of isoforms transcribed from an intronic promoter.Sci Rep2021
33211864FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs.Nucleic Acids Res2021
34521352The choice of negative control antisense oligonucleotides dramatically impacts downstream analysis depending on the cellular background.BMC Genom Data2021
34389798Publisher Correction: Nanopore sequencing reveals TACC2 locus complexity and diversity of isoforms transcribed from an intronic promoter.Sci Rep2021
33931666Nanopore sequencing reveals TACC2 locus complexity and diversity of isoforms transcribed from an intronic promoter.Sci Rep2021
34521352The choice of negative control antisense oligonucleotides dramatically impacts downstream analysis depending on the cellular background.BMC Genom Data2021
34389798Publisher Correction: Nanopore sequencing reveals TACC2 locus complexity and diversity of isoforms transcribed from an intronic promoter.Sci Rep2021
34078885Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network.Nat Commun2021
31358803The genome sequence of Streptomyces rochei 7434AN4, which carries a linear chromosome and three characteristic linear plasmids.Sci Rep2019
31358803The genome sequence of Streptomyces rochei 7434AN4, which carries a linear chromosome and three characteristic linear plasmids.Sci Rep2019
28850106FANTOM5 CAGE profiles of human and mouse samples.Sci Data2017
28850106FANTOM5 CAGE profiles of human and mouse samples.Sci Data2017
25495952The tap-tpg gene pair on the linear plasmid functions to maintain a linear topology of the chromosome in Streptomyces rochei.Mol Microbiol2015
25495952The tap-tpg gene pair on the linear plasmid functions to maintain a linear topology of the chromosome in Streptomyces rochei.Mol Microbiol2015
25823645Eprobe-mediated screening system for somatic mutations in the KRAS locus.Oncol Rep2015
25823645Eprobe-mediated screening system for somatic mutations in the KRAS locus.Oncol Rep2015
24670764A promoter-level mammalian expression atlas.Nature2014
24670764A promoter-level mammalian expression atlas.Nature2014
20608950Cytodiagnosis through use of a z-axis video by volunteer observers: a promising tool for external quality assessment.Cytopathology2011
20608950Cytodiagnosis through use of a z-axis video by volunteer observers: a promising tool for external quality assessment.Cytopathology2011
20211142An atlas of combinatorial transcriptional regulation in mouse and man.Cell2010
20937088A second generation genetic linkage map of Japanese flounder (Paralichthys olivaceus).BMC Genomics2010
21143210Effects of the turn-back primer on intermediate product generation in isothermal DNA amplification.Biotechniques2010
20573402The combination of gene perturbation assay and ChIP-chip reveals functional direct target genes for IRF8 in THP-1 cells.Mol Immunol2010
20211142An atlas of combinatorial transcriptional regulation in mouse and man.Cell2010
21143210Effects of the turn-back primer on intermediate product generation in isothermal DNA amplification.Biotechniques2010
20937088A second generation genetic linkage map of Japanese flounder (Paralichthys olivaceus).BMC Genomics2010
20573402The combination of gene perturbation assay and ChIP-chip reveals functional direct target genes for IRF8 in THP-1 cells.Mol Immunol2010
19156205Direct metagenomic detection of viral pathogens in nasal and fecal specimens using an unbiased high-throughput sequencing approach.PLoS One2009
19156205Direct metagenomic detection of viral pathogens in nasal and fecal specimens using an unbiased high-throughput sequencing approach.PLoS One2009
19377474The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.Nat Genet2009
19374776Genome-wide investigation of in vivo EGR-1 binding sites in monocytic differentiation.Genome Biol2009
19374776Genome-wide investigation of in vivo EGR-1 binding sites in monocytic differentiation.Genome Biol2009
19377474The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.Nat Genet2009
18611171Development of a DNA barcode tagging method for monitoring dynamic changes in gene expression by using an ultra high-throughput sequencer.Biotechniques2008
18611171Development of a DNA barcode tagging method for monitoring dynamic changes in gene expression by using an ultra high-throughput sequencer.Biotechniques2008
17257193A set of polymorphic trinucleotide and tetranucleotide microsatellite markers for the Japanese flounder (Paralichthys olivaceus).Anim Genet2007
17257193A set of polymorphic trinucleotide and tetranucleotide microsatellite markers for the Japanese flounder (Paralichthys olivaceus).Anim Genet2007
18043742Gene organization in rice revealed by full-length cDNA mapping and gene expression analysis through microarray.PLoS One2007
18043742Gene organization in rice revealed by full-length cDNA mapping and gene expression analysis through microarray.PLoS One2007
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Collaborators

Yoshihide Hayashizaki
Center for Integrative Medical Sciences
Co-authored papers 21
Piero Carninci
RIKEN Center for Integrative Medical Sciences
Co-authored papers 11
Jun Kawai
RIKEN Center for Integrative Medical Sciences
Co-authored papers 11
Harukazu Suzuki
RIKEN Center for Integrative Medical Sciences
Co-authored papers 11
Masayoshi Itoh
RIKEN Center for Integrative Medical Sciences
Co-authored papers 10
Hiromi Nishiyori
Center for Integrative Medical Sciences
Co-authored papers 9
Mitsuyoshi Murata
Center for Integrative Medical Sciences
Co-authored papers 9
Hideya Kawaji
RIKEN Center for Integrative Medical Sciences
Co-authored papers 8
Shiro Fukuda
Graduate School of Medicine, Osaka University
Co-authored papers 8
Shohei Noma
Center for Integrative Medical Sciences
Co-authored papers 8
Takeya Kasukawa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 8
Miki Kojima
Center for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology
Co-authored papers 7
Dave S B Hoon
Saint John's Cancer Institute at Saint John's Health Center
Co-authored papers 7
David A Hume
Mater Research Institute-UQ, Translational Research Institute
Co-authored papers 7
Alistair R R Forrest
RIKEN Center for Integrative Medical Sciences
Co-authored papers 7
Noriko Ninomiya
Japan Tobacco Inc.
Co-authored papers 6
Takahiro Arakawa
Tokyo University of Technology
Co-authored papers 6
Mutsumi Kanamori-Katayama
Karolinska Institutet
Co-authored papers 6
Masanori Suzuki
Yokohama City University
Co-authored papers 6
Atsutaka Kubosaki
National Institute of Health Sciences.
Co-authored papers 6
Akira Hasegawa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 6
Jay W Shin
Genome Institute of Singapore (GIS)
Co-authored papers 6
Carsten O Daub
International Institute of Molecular and Cell Biology in Warsaw
Co-authored papers 5
Jordan A Ramilowski
Advanced Medical Research Center, Yokohama City University
Co-authored papers 5
Erik Arner
RIKEN Center for Integrative Medical Sciences (IMS)
Co-authored papers 5
Jessica Severin
Center for Integrative Medical Sciences
Co-authored papers 5
Imad Abugessaisa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 5
Tsugumi Kawashima
RIKEN Center for Integrative Medical Sciences
Co-authored papers 5
Winston Hide
Harvard Medical School
Co-authored papers 4
Christophe Simon
RIKEN Yokohama Institute
Co-authored papers 4
Release 1.2