Author details

Full Name

Carolina W??hlby

Affiliation

Uppsala University

ORCID

Career Start Year

2002

Papers

H Index

Expertise

CM4AI Collaborator

Emma Lundberg (CM4AI)

PMID	Paper Title	Journal Title	Published Year
32780807	Regular Use of Depot Medroxyprogesterone Acetate Causes Thinning of the Superficial Lining and Apical Distribution of Human Immunodeficiency Virus Target Cells in the Human Ectocervix.	J Infect Dis	2022
32750907	Deep Learning With Conformal Prediction for Hierarchical Analysis of Large-Scale Whole-Slide Tissue Images.	IEEE J Biomed Health Inform	2021
33739401	Rapid development of cloud-native intelligent data pipelines for scientific data streams using the HASTE Toolkit.	Gigascience	2021
33524053	TEM image restoration from fast image streams.	PLoS One	2021
34089228	Machine learning for cell classification and neighborhood analysis in glioma tissue.	Cytometry A	2021
33949890	Deep-learning models for lipid nanoparticle-based drug delivery.	Nanomedicine (Lond)	2021
32976679	Spage2vec: Unsupervised representation of localized spatial gene expression signatures.	FEBS J	2021
32750958	Towards Automatic Protein Co-Expression Quantification in Immunohistochemical TMA Slides.	IEEE J Biomed Health Inform	2021
32163435	Introducing Hann windows for reducing edge-effects in patch-based image segmentation.	PLoS One	2020
31926806	Artificial intelligence for diagnosis and grading of prostate cancer in biopsies: a population-based, diagnostic study.	Lancet Oncol	2020
33076915	Automated identification of the mouse brain's spatial compartments from in situ sequencing data.	BMC Biol	2020
32449759	TissUUmaps: interactive visualization of large-scale spatial gene expression and tissue morphology data.	Bioinformatics	2020
30565841	Deep Learning in Image Cytometry: A Review.	Cytometry A	2019
31792342	Impact of Q-Griffithsin anti-HIV microbicide gel in non-human primates: In situ analyses of epithelial and immune cell markers in rectal mucosa.	Sci Rep	2019
29094393	Quantitative image analysis of protein expression and colocalisation in skin sections.	Exp Dermatol	2018
30107096	Multiplexed fluorescence microscopy reveals heterogeneity among stromal cells in mouse bone marrow sections.	Cytometry A	2018
30074852	Image-Based Detection of Patient-Specific Drug-Induced Cell-Cycle Effects in Glioblastoma.	SLAS Discov	2018
29272532	Human Immunodeficiency Virus-Infected Women Have High Numbers of CD103-CD8+ T Cells Residing Close to the Basal Membrane of the Ectocervical Epithelium.	J Infect Dis	2018
27613194	Deep Fish.	SLAS Discov	2017
28494118	Objective automated quantification of fluorescence signal in histological sections of rat lens.	Cytometry A	2017
29393213	Differential Neuroprotective Effects of Interleukin-1 Receptor Antagonist on Spinal Cord Neurons after Excitotoxic Injury.	Neuroimmunomodulation	2017
29031005	Quantitative high-content/high-throughput microscopy analysis of lipid droplets in subject-specific adipogenesis models.	Cytometry A	2017
29142246	A comprehensive structural, biochemical and biological profiling of the human NUDIX hydrolase family.	Nat Commun	2017
29190737	A short feature vector for image matching: The Log-Polar Magnitude feature descriptor.	PLoS One	2017
28798336	Automated Training of Deep Convolutional Neural Networks for Cell Segmentation.	Sci Rep	2017
26800009	Global gray-level thresholding based on object size.	Cytometry A	2016
27467724	The quest for multiplexed spatially resolved transcriptional profiling.	Nat Methods	2016
26987120	PopulationProfiler: A Tool for Population Analysis and Visualization of Image-Based Cell Screening Data.	PLoS One	2016
25725260	Next-generation pathology--surveillance of tumor microecology.	J Mol Biol	2015
26202090	Compaction of rolling circle amplification products increases signal integrity and signal-to-noise ratio.	Sci Rep	2015
24385254	Automated analysis of dynamic behavior of single cells in picoliter droplets.	Lab Chip	2014
24784529	High- and low-throughput scoring of fat mass and body fat distribution in C. elegans.	Methods	2014
23322760	Blind color decomposition of histological images.	IEEE Trans Med Imaging	2013
24499782	AUTOMATED QUANTIFICATION OF ZEBRAFISH TAIL DEFORMATION FOR HIGH-THROUGHPUT DRUG SCREENING.	Proc IEEE Int Symp Biomed Imaging	2013
23852452	In situ sequencing for RNA analysis in preserved tissue and cells.	Nat Methods	2013
23601103	Pseudomonas aeruginosa disrupts Caenorhabditis elegans iron homeostasis, causing a hypoxic response and death.	Cell Host Microbe	2013
23766936	Automated classification of immunostaining patterns in breast tissue from the human protein atlas.	J Pathol Inform	2013
23403568	High-throughput hyperdimensional vertebrate phenotyping.	Nat Commun	2013
21906700	Visualising individual sequence-specific protein-DNA interactions in situ.	N Biotechnol	2012
23272214	Non-random mtDNA segregation patterns indicate a metastable heteroplasmic segregation unit in m.3243A>G cybrid cells.	PLoS One	2012
22522656	An image analysis toolbox for high-throughput C. elegans assays.	Nat Methods	2012
22159032	Fully automated cellular-resolution vertebrate screening platform with parallel animal processing.	Lab Chip	2012
21671402	Automated classification of multicolored rolling circle products in dual-channel wide-field fluorescence microscopy.	Cytometry A	2011
22036742	Increasing the dynamic range of in situ PLA.	Nat Methods	2011
19760746	Robust signal detection in 3D fluorescence microscopy.	Cytometry A	2010
21383863	RESOLVING CLUSTERED WORMS VIA PROBABILISTIC SHAPE MODELS.	Proc IEEE Int Symp Biomed Imaging	2010
20879454	Morphology-guided graph search for untangling objects: C. elegans analysis.	Med Image Comput Comput Assist Interv	2010
19926775	Bright-field microscopy visualization of proteins and protein complexes by in situ proximity ligation with peroxidase detection.	Clin Chem	2010
19006073	A detailed analysis of 3D subcellular signal localization.	Cytometry A	2009
19493110	Quantification of colocalization and cross-talk based on spectral angles.	J Microsc	2009

1 - 50 of 59

Devin P Sullivan

KTH - Royal Institute of Technology

Career Start Year 2015

Number of shared co-authors 3

Korsuk Sirinukunwattana

Institute of Biomedical Engineering (IBME), University of Oxford

Career Start Year 2013

Number of shared co-authors 2

David Van Valen

California Institute of Technology, USA. institute of technology.edu.

Career Start Year 2009

Number of shared co-authors 1

Kevin Smith

KTH Royal Institute of Technology

Career Start Year 2008

Number of shared co-authors 2

Loic A Royer

Center for Systems Biology Dresden

Career Start Year 2008

Number of shared co-authors 1

Lee A D Cooper

Northwestern Feinberg School of Medicine

Career Start Year 2008

Number of shared co-authors 0

Daniel Racoceanu

Sorbonne Universite, Institut du Cerveau-Paris Brain Institute-ICM, CNRS, Inserm

Career Start Year 2008

Number of shared co-authors 2

Theodore Alexandrov

Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California

Career Start Year 2008

Number of shared co-authors 0

Mei Chen

Robotics Institute, Carnegie Mellon University

Career Start Year 2007

Number of shared co-authors 0

Blair J Rossetti

Emory University

Career Start Year 2006

Number of shared co-authors 0

Stephan Preibisch

Howard Hughes Medical Institute

Career Start Year 2005

Number of shared co-authors 0

Daniel Sage

Ecole Polytechnique Federale de Lausanne (EPFL)

Career Start Year 2004

Number of shared co-authors 3

Ge Yang

College of Chemistry, Sichuan University

Career Start Year 2003

Number of shared co-authors 0

Gustavo K Rohde

University of Virginia

Career Start Year 2003

Number of shared co-authors 1

May D Wang

Georgia Institute of Technology

Career Start Year 2003

Number of shared co-authors 0

Nasir Rajpoot

University of Warwick, University Hospitals Coventry, UK The Alan Turing Institute

Career Start Year 2003

Number of shared co-authors 2

Christian Tischer

Center for Bioimage Analysis

Career Start Year 2003

Number of shared co-authors 1

Kevin W Eliceiri

University of Wisconsin-Madison

Career Start Year 2001

Number of shared co-authors 3

Lani F Wu

Department of Pharmaceutical Chemistry, University of California san francisco

Career Start Year 2001

Number of shared co-authors 0

Arrate Mu??oz-Barrutia

Universidad Carlos III de Madrid

Career Start Year 2001

Number of shared co-authors 4

Christophe Zimmer

Institut Pasteur, Universite Paris Cite, France Institut Pasteur

Career Start Year 2000

Number of shared co-authors 1

Thomas Walter

PSL University

Career Start Year 2000

Number of shared co-authors 3

Jason D Hipp

Mayo Clinic

Career Start Year 2000

Number of shared co-authors 3

Roland Eils

Berlin Institute of Health (BIH) and Charite

Career Start Year 1995

Number of shared co-authors 1

Stephen T C Wong

Houston Methodist Research Institute

Career Start Year 1995

Number of shared co-authors 0

Jean-Karim H??rich??

University of California san francisco

Career Start Year 1994

Number of shared co-authors 2

Jeroen A W M van der Laak

Radboud University Medical Center

Career Start Year 1994

Number of shared co-authors 3

Jason R Swedlow

University of Dundee

Career Start Year 1984

Number of shared co-authors 1

Peter Horvath

Institute of Biochemistry, Biological Research Centre

Career Start Year 1977

Number of shared co-authors 3

Robert F Murphy

Carnegie Mellon University

Career Start Year 1975

Number of shared co-authors 1

row(s) 1 - 30 of 30

Mats Nilsson

Stockholm University

Co-authored papers 6

Damian J Matuszewski

Uppsala University

Co-authored papers 4

Ola Spjuth

Department of Pharmaceutical Biosciences, Uppsala University

Co-authored papers 4

Anne E Carpenter

Broad Institute of MIT and Harvard

Co-authored papers 4

Polina Golland

Massachusetts Institute of Technology

Co-authored papers 3

Kimmo Kartasalo

Karolinska Institutet

Co-authored papers 2

Jordi Carreras Puigvert

Department of Pharmaceutical Biosciences, Uppsala University

Co-authored papers 2

Cecilia Lindskog

Uppsala University

Co-authored papers 2

Lee Kamentsky

Picower Institute for Learning and Memory, Massachusetts Institute of Technology

Co-authored papers 2

Mark-Anthony Bray

Co-authored papers 2

Ulf Martens

Stockholm University

Co-authored papers 1

Jos?? Manuel Calder??n-Monta??o

Faculty of Pharmacy, University of Seville

Co-authored papers 1

Jessica Svedlund

Co-authored papers 1

Ronnie P-A Berntsson

Umea University

Co-authored papers 1

Caroline Kampf

Uppsala University

Co-authored papers 1

Megan Carter

Stockholm University

Co-authored papers 1

P??l Stenmark

Stockholm University

Co-authored papers 1

Zihan Liu

Co-authored papers 1

Olga Loseva

Karolinska Institutet

Co-authored papers 1

Peter A Humphrey

Yale University School of Medicine

Co-authored papers 1

Johan Lindberg

Karolinska Institute

Co-authored papers 1

Hammou Ait Blal

KTH Royal Institute of Technology

Co-authored papers 1

Helene Andersson-Svahn

KTH Royal Institute of Technology

Co-authored papers 1

Thomas Helleday

The University of Sheffield

Co-authored papers 1

Irenaeus F M de Coo

Unit Clinical Genomics, Maastricht University

Co-authored papers 1

Harsha K Rajasimha

Co-authored papers 1

Per-Henrik Edqvist

Uppsala University

Co-authored papers 1

Magnus Isaksson

Uppsala University

Co-authored papers 1

John R Srigley

University of Toronto

Co-authored papers 1

Ann-Sofie Jemth

Karolinska Institutet

Co-authored papers 1

1 - 30

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