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Author Details

Dong Li
Anhui Medical University
2003
99
32
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37889038CDS-DB, an omnibus for patient-derived gene expression signatures induced by cancer treatment.Nucleic Acids Res2024
37904598BATMAN-TCM 2.0: an enhanced integrative database for known and predicted interactions between traditional Chinese medicine ingredients and target proteins.Nucleic Acids Res2024
37006438NAD+ biosynthesis metabolism predicts prognosis and indicates immune microenvironment for breast cancer.Pathol Oncol Res2023
37486750DCABM-TCM: A Database of Constituents Absorbed into the Blood and Metabolites of Traditional Chinese Medicine.J Chem Inf Model2023
37418899An integrated computational strategy to predict personalized cancer drug combinations by reversing drug resistance signatures.Comput Biol Med2023
37183442Human Autoantigen Atlas: Searching for the Hallmarks of Autoantigens.J Proteome Res2023
34314873A Yeast BiFC-seq Method for Genome-wide Interactome Mapping.Genomics Proteomics Bioinformatics2022
35795573CPDR: An R Package of Recommending Personalized Drugs for Cancer Patients by Reversing the Individual's Disease-Related Signature.Front Pharmacol2022
36093542The identification of hub biomarkers and pathways in lung cancer and prognostic evaluation.Transl Cancer Res2022
36010562Integration of Human Protein Sequence and Protein-Protein Interaction Data by Graph Autoencoder to Identify Novel Protein-Abnormal Phenotype Associations.Cells2022
35338014Exploration of Target Spaces in the Human Genome for Protein and Peptide Drugs.Genomics Proteomics Bioinformatics2022
34669962UbiBrowser 2.0: a comprehensive resource for proteome-wide known and predicted ubiquitin ligase/deubiquitinase-substrate interactions in eukaryotic species.Nucleic Acids Res2022
34570230CTR-DB, an omnibus for patient-derived gene expression signatures correlated with cancer drug response.Nucleic Acids Res2022
34237377Deciphering variation of 239 elite japonica rice genomes for whole genome sequences-enabled breeding.Genomics2021
32159764MMHub, a database for the mulberry metabolome.Database (Oxford)2020
32045991Flavones Produced by Mulberry Flavone Synthase Type I Constitute a Defense Line against the Ultraviolet-B Stress.Plants (Basel)2020
31917553Metabolic Profiling and Transcriptome Analysis of Mulberry Leaves Provide Insights into Flavonoid Biosynthesis.J Agric Food Chem2020
32038525Development of a Sensitive <i>Escherichia coli</i> Bioreporter Without Antibiotic Markers for Detecting Bioavailable Copper in Water Environments.Front Microbiol2020
32338561RadAtlas 1.0: a knowledgebase focusing on radiation-associated genes.Int J Radiat Biol2020
32566195Protein-enriched fiber <i>vegan meal</i> promote satiety and suppress food intake in rats.Food Sci Nutr2020
30659450Enhancement of salinomycin production by ribosome engineering in Streptomyces albus.Sci China Life Sci2019
31641286Author Correction: Molecular resolution imaging by repetitive optical selective exposure.Nat Methods2019
32082621FibroAtlas: A Database for the Exploration of Fibrotic Diseases and Their Genes.Cardiol Res Pract2019
30230238Design of multi-drug combinations for poly-pharmacological effects using composition-activity relationship modeling and multi-objective optimization approach: Application in traditional Chinese medicine.Chem Biol Drug Des2019
31131048In-depth serum proteomics reveals biomarkers of psoriasis severity and response to traditional Chinese medicine.Theranostics2019
31086734OsteoporosAtlas: a human osteoporosis-related gene database.PeerJ2019
31021279UVGD 1.0: a gene-centric database bridging ultraviolet radiation and molecular biology effects in organisms.Int J Radiat Biol2019
30958118Structures and functions of invertebrate glycosylation.Open Biol2019
29368263Conformational determinants necessary for secretion of Paecilomyces thermophila β-1,4-xylosidase that lacks a signal peptide.AMB Express2018
30126196Node-Identification-Based Secure Time Synchronization in Industrial Wireless Sensor Networks.Sensors (Basel)2018
30223296Revealing the metabolic characteristics of human embryonic stem cells by genome-scale metabolic modeling.FEBS Lett2018
29688358AllerGAtlas 1.0: a human allergy-related genes database.Database (Oxford)2018
29660070Full-Length Transcriptome Sequencing and Modular Organization Analysis of the Naringin/Neoeriocitrin-Related Gene Expression Pattern in Drynaria roosii.Plant Cell Physiol2018
27924021AAgAtlas 1.0: a human autoantigen database.Nucleic Acids Res2017
31725860HisgAtlas 1.0: a human immunosuppression gene database.Database (Oxford)2017
33473696Complete chloroplast genome sequence of the medical fern <i>Drynaria roosii</i> and its phylogenetic analysis.Mitochondrial DNA B Resour2017
28356351Juvenile hormone differentially regulates two <i>Grp78</i> genes encoding protein chaperones required for insect fat body cell homeostasis and vitellogenesis.J Biol Chem2017
28098750Cluster-Based Maximum Consensus Time Synchronization for Industrial Wireless Sensor Networks.Sensors (Basel)2017
29254952Toward an understanding of the protein interaction network of the human liver.Mol Syst Biol2017
28839186An integrated bioinformatics platform for investigating the human E3 ubiquitin ligase-substrate interaction network.Nat Commun2017
28054638Functional constraints on adaptive evolution of protein ubiquitination sites.Sci Rep2017
26879404BATMAN-TCM: a Bioinformatics Analysis Tool for Molecular mechANism of Traditional Chinese Medicine.Sci Rep2016
27562671A Cell-type-resolved Liver Proteome.Mol Cell Proteomics2016
27514447Secretory expression of a heterologous protein, Aiio-AIO6BS, in Bacillus subtilis via a non-classical secretion pathway.Biochem Biophys Res Commun2016
25199918An association analysis between psychophysical characteristics and genome-wide gene expression changes in human adaptation to the extreme climate at the Antarctic Dome Argus.Mol Psychiatry2015
26076068Quest for Missing Proteins: Update 2015 on Chromosome-Centric Human Proteome Project.J Proteome Res2015
25638810Similarity-based prediction for Anatomical Therapeutic Chemical classification of drugs by integrating multiple data sources.Bioinformatics2015
25794139CAPER 3.0: A Scalable Cloud-Based System for Data-Intensive Analysis of Chromosome-Centric Human Proteome Project Data Sets.J Proteome Res2015
24261964CAPER 2.0: an interactive, configurable, and extensible workflow-based platform to analyze data sets from the Chromosome-centric Human Proteome Project.J Proteome Res2014
25415319Association of GWAS-identified lung cancer susceptibility loci with survival length in patients with small-cell lung cancer treated with platinum-based chemotherapy.PLoS One2014
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Collaborators

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Co-authored papers 47
Zhongnan Hospital of Wuhan University
Co-authored papers 9
Institute of Medical Research, Northwestern Polytechnical University
Co-authored papers 8
Experimental Research Center, China Academy of Chinese Medical Sciences
Co-authored papers 6
College of Plant Science and Technology, Beijing University of Agriculture
Co-authored papers 6
Co-authored papers 5
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The Second Hospital, Jilin University
Co-authored papers 3
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Co-authored papers 2
University of Copenhagen, Universitetsparken 15
Co-authored papers 2
Co-authored papers 2
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 2
Co-authored papers 2
Biodesign Institute, Arizona State University
Co-authored papers 2
Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia
Co-authored papers 2
Monash University
Co-authored papers 2
PLA No. 988 Hospital of Joint Logistics Support Force
Co-authored papers 2
Co-authored papers 2
Northeastern University
Co-authored papers 1
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Cancer Research Centre (IBMCC/CSIC/USAL/IBSAL)
Co-authored papers 1
Falk Center for Molecular Therapeutics, Northwestern University
Co-authored papers 1
Institute of Chemistry, Federal University of Rio de Janeiro
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Groningen Research Institute of Pharmacy, University of Groningen
Co-authored papers 1