Author details

Full Name

Todd J Vision

Affiliation

University of North Carolina

ORCID

Career Start Year

1995

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37776088	Evolutionary rescue under demographic and environmental stochasticity.	J Evol Biol	2023
35285502	Assessing Bayesian Phylogenetic Information Content of Morphological Data Using Knowledge From Anatomy Ontologies.	Syst Biol	2022
33390628	Do synthesis centers synthesize? A semantic analysis of topical diversity in research.	Res Policy	2021
31596473	A Logical Model of Homology for Comparative Biology.	Syst Biol	2020
32210449	Journal data policies: Exploring how the understanding of editors and authors corresponds to the policies themselves.	PLoS One	2020
32267552	Genetic architecture influences when and how hybridization contributes to colonization.	Evolution	2020
33816887	Avoiding "conflicts of interest": a computational approach to scheduling parallel conference tracks and its human evaluation.	PeerJ Comput Sci	2019
30345032	Complete plastome sequences of two <i>Psidium</i> species from the GalÃ¡pagos Islands.	F1000Res	2018
30576485	Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems.	Database (Oxford)	2018
26776180	INVESTIGATING THE IMPORTANCE OF ANATOMICAL HOMOLOGY FOR CROSS-SPECIES PHENOTYPE COMPARISONS USING SEMANTIC SIMILARITY. Accepted at Pacific Symposium on Biocomputing, 2016.	Pac Symp Biocomput	2016
26500251	Phenoscape: Identifying Candidate Genes for Evolutionary Phenotypes.	Mol Biol Evol	2016
26220875	Using the phenoscape knowledgebase to relate genetic perturbations to phenotypic evolution.	Genesis	2015
24336482	The standing pool of genomic structural variation in a natural population of Mimulus guttatus.	Genome Biol Evol	2014
25977787	Open data for evolutionary synthesis: an introduction to the NESCent collection.	Sci Data	2014
25411634	Annotation of phenotypic diversity: decoupling data curation and ontology curation using Phenex.	J Biomed Semantics	2014
23335860	Science incubators: synthesis centers and their role in the research ecosystem.	PLoS Biol	2013
24109559	Data reuse and the open data citation advantage.	PeerJ	2013
24267744	The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes.	J Biomed Semantics	2013
23587026	A decadal view of biodiversity informatics: challenges and priorities.	BMC Ecol	2013
22736877	500,000 fish phenotypes: The new informatics landscape for evolutionary and developmental biology of the vertebrate skeleton.	J Appl Ichthyol	2012
21186249	Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees.	Syst Biol	2011
22645531	The iPlant Collaborative: Cyberinfrastructure for Plant Biology.	Front Plant Sci	2011
21593852	Data archiving is a good investment.	Nature	2011
20463926	Phenex: ontological annotation of phenotypic diversity.	PLoS One	2010
20547848	Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus).	Proc Natl Acad Sci U S A	2010
20547776	The teleost anatomy ontology: anatomical representation for the genomics age.	Syst Biol	2010
20505755	Evolutionary characters, phenotypes and ontologies: curating data from the systematic biology literature.	PLoS One	2010
19147663	A hierarchical model for incomplete alignments in phylogenetic inference.	Bioinformatics	2009
19503594	Systematic identification of balanced transposition polymorphisms in Saccharomyces cerevisiae.	PLoS Genet	2009
18366758	Using ESTs for phylogenomics: can one accurately infer a phylogenetic tree from a gappy alignment?	BMC Evol Biol	2008
18542914	Fine mapping a QTL for carbon isotope composition in tomato.	Theor Appl Genet	2008
18535013	Compensatory evolution in RNA secondary structures increases substitution rate variation among sites.	Mol Biol Evol	2008
17237041	A computational system to select candidate genes for complex human traits.	Bioinformatics	2007
17670808	Divergence in expression between duplicated genes in Arabidopsis.	Mol Biol Evol	2007
17305850	The molecular ecologist's guide to expressed sequence tags.	Mol Ecol	2007
16381967	Phytome: a platform for plant comparative genomics.	Nucleic Acids Res	2006
32689204	The effects of resource availability and environmental conditions on genetic rankings for carbon isotope discrimination during growth in tomato and rice.	Funct Plant Biol	2006
16901231	Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA).	OMICS	2006
16888335	Assessing the significance of quantitative trait loci in replicable mapping populations.	Genetics	2006
16483367	Tracking the evolution of alternatively spliced exons within the Dscam family.	BMC Evol Biol	2006
15781710	Improving quantitative trait loci mapping resolution in experimental crosses by the use of genotypically selected samples.	Genetics	2005
16159320	Gene order in plants: a slow but sure shuffle.	New Phytol	2005
15247399	Contrasting modes of diversification in the Aux/IAA and ARF gene families.	Plant Physiol	2004
12855440	Fast identification and statistical evaluation of segmental homologies in comparative maps.	Bioinformatics	2003
12952531	An international showcase of bioinformatics research.	Genome Biol	2003
12805622	Identification and characterization of aluminum tolerance loci in Arabidopsis (Landsberg erecta x Columbia) by quantitative trait locus mapping. A physiologically simple but genetically complex trait.	Plant Physiol	2003
11848417	Solid-phase PCR in microwells: effects of linker length and composition on tethering, hybridization, and extension.	Biotechniques	2002
12200474	Patterns of nucleotide substitution among simultaneously duplicated gene pairs in Arabidopsis thaliana.	Mol Biol Evol	2002
11550701	Gene duplication and evolution.	Science	2001
10790413	Selective mapping: a strategy for optimizing the construction of high-density linkage maps.	Genetics	2000

1 - 50 of 53

Salvador Capella-Gutierrez

Spanish National Bioinformatics Institute (INB/ELIXIR-ES)

Career Start Year 2009

Number of shared co-authors 3

Yi Han

Baylor College of Medicine

Career Start Year 2008

Number of shared co-authors 3

Nuno A Fonseca

European Bioinformatics Institute

Career Start Year 2008

Number of shared co-authors 2

Monica C Munoz-Torres

University of Colorado Anschutz Medical Campus

Career Start Year 2007

Number of shared co-authors 9

Sandra L Lee

Baylor College of Medicine

Career Start Year 2006

Number of shared co-authors 4

Francesc L??pez-Gir??ldez

Yale Center for Genomic Analysis

Career Start Year 2005

Number of shared co-authors 0

Christophe Dessimoz

University of Lausanne

Career Start Year 2005

Number of shared co-authors 3

Haibao Tang

Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University

Career Start Year 2005

Number of shared co-authors 6

Steven Maere

Ghent University

Career Start Year 2005

Number of shared co-authors 0

Jeffrey A Rosenfeld

Cancer Institute of New Jersey

Career Start Year 2004

Number of shared co-authors 1

Michael Place

Center for Genomic Science Innovation, University of Wisconsin-Madison

Career Start Year 2004

Number of shared co-authors 1

Brad A Chapman

Harvard T.H. Chan School of Public Health

Career Start Year 2003

Number of shared co-authors 5

Rutger A Vos

Naturalis Biodiversity Center

Career Start Year 2003

Number of shared co-authors 13

Scott J Emrich

The Pennsylvania State University College of Medicine

Career Start Year 2002

Number of shared co-authors 3

Timothy B Sackton

Harvard University

Career Start Year 2002

Number of shared co-authors 2

Tyler Alioto

Universitat de Barcelona (UB)

Career Start Year 2001

Number of shared co-authors 1

Pjotr Prins

Wageningen University & Research

Career Start Year 2001

Number of shared co-authors 3

Rajkumar Sasidharan

University of California los angeles

Career Start Year 2000

Number of shared co-authors 2

C Titus Brown

University of California davis

Career Start Year 1999

Number of shared co-authors 7

Anton Nekrutenko

The Pennsylvania State University, University Park

Career Start Year 1998

Number of shared co-authors 0

Ian Korf

University of California davis

Career Start Year 1998

Number of shared co-authors 7

Andrew D Farmer

National Center for Genome Resources

Career Start Year 1997

Number of shared co-authors 8

Louxin Zhang

National University of Singapore

Career Start Year 1996

Number of shared co-authors 0

Martin J Lercher

Institute for Computer Science, Heinrich Heine University

Career Start Year 1994

Number of shared co-authors 1

Mark Yandell

University of Utah

Career Start Year 1994

Number of shared co-authors 8

Ewan Birney

European Bioinformatics Institute

Career Start Year 1992

Number of shared co-authors 10

Kim C Worley

Baylor College of Medicine

Career Start Year 1991

Number of shared co-authors 7

John M Hancock

the University of Texas Health Science Center at Houston

Career Start Year 1982

Number of shared co-authors 4

Brian J Haas

Broad Institute of MIT and Harvard

Career Start Year 1981

Number of shared co-authors 6

Richard Durbin

University of Cambridge

Career Start Year 1964

Number of shared co-authors 7

row(s) 1 - 30 of 30

Hilmar Lapp

Duke University

Co-authored papers 13

James P Balhoff

Renaissance Computing Institute, University of North Carolina

Co-authored papers 12

Paula M Mabee

University of South Dakota

Co-authored papers 11

Wasila M Dahdul

University of California irvine

Co-authored papers 10

Monte Westerfield

Institute of Neuroscience, University of Oregon

Co-authored papers 6

Peter E Midford

University of Kansas

Co-authored papers 5

John G Lundberg

Academy of Natural Sciences of Philadelphia and Drexel University (ANSP)

Co-authored papers 5

Prashanti Manda

University of North Carolina at Greensboro

Co-authored papers 4

Thomas A Dececchi

Mount Marty University

Co-authored papers 3

Nizar Ibrahim

University of Portsmouth

Co-authored papers 2

Cartik Kothari

Harvard Medical School

Co-authored papers 2

Christopher J Mungall

International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences

Co-authored papers 2

James H Leebens-Mack

Co-authored papers 2

Fei Zou

Co-authored papers 2

Eric W Ganko

University of North Carolina at Chapel Hill

Co-authored papers 2

Jonathan A Eisen

McLean Hospital

Co-authored papers 1

Nirav Merchant