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Author Details

Jean Yee Hwa Yang
The University of Sydney
2001
146
38
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36736097Deep multimodal graph-based network for survival prediction from highly multiplexed images and patient variables.Comput Biol Med2023
37965156<i>Pcdh19</i> mediates olfactory sensory neuron coalescence during postnatal stages and regeneration.iScience2023
37627252Serum Soluble Lectin-like Oxidized Low-Density Lipoprotein Receptor-1 (sLOX-1) Is Associated with Atherosclerosis Severity in Coronary Artery Disease.Biomolecules2023
37857632Gene regulatory network reconstruction: harnessing the power of single-cell multi-omic data.NPJ Syst Biol Appl2023
37773250simKAP: simulation framework for the kidney allocation process with decision making model.Sci Rep2023
37767525A Multi-Step Precision Pathway for Predicting Allograft Survival in Heterogeneous Cohorts of Kidney Transplant Recipients.Transpl Int2023
37460600Atlas-scale single-cell multi-sample multi-condition data integration using scMerge2.Nat Commun2023
37292801scTIE: data integration and inference of gene regulation using single-cell temporal multimodal data.bioRxiv2023
37192969Overcoming cohort heterogeneity for the prediction of subclinical cardiovascular disease risk.iScience2023
37314966Ensemble deep learning of embeddings for clustering multimodal single-cell omics data.Bioinformatics2023
37398694Trajectories of systolic blood pressure decline in kidney transplant donors prior to circulatory death and delayed graft function.Clin Kidney J2023
37096588Benchmarking of analytical combinations for COVID-19 outcome prediction using single-cell RNA sequencing data.Brief Bioinform2023
36918961NEMoE: a nutrition aware regularized mixture of experts model to identify heterogeneous diet-microbiome-host health interactions.Microbiome2023
34461168Factors Associated With Advanced Colorectal Neoplasia in Patients With CKD.Am J Kidney Dis2022
35411370Computational approaches for direct cell reprogramming: from the bulk omics era to the single cell era.Brief Funct Genomics2022
35645785Nutritional Intake and Gut Microbiome Composition Predict Parkinson's Disease.Front Aging Neurosci2022
35721459Nonutilization of Kidneys From Donors After Circulatory Determinant of Death.Transplant Direct2022
35656540The Gut Microbiome in Parkinson's Disease: A Longitudinal Study of the Impacts on Disease Progression and the Use of Device-Assisted Therapies.Front Aging Neurosci2022
36040148scFeatures: multi-view representations of single-cell and spatial data for disease outcome prediction.Bioinformatics2022
36358632Viral Integration Plays a Minor Role in the Development and Prognostication of Oral Squamous Cell Carcinoma.Cancers (Basel)2022
35300460scREMOTE: Using multimodal single cell data to predict regulatory gene relationships and to build a computational cell reprogramming model.NAR Genom Bioinform2022
35135612Benchmarking clustering algorithms on estimating the number of cell types from single-cell RNA-sequencing data.Genome Biol2022
32916179Prediction modeling-part 2: using machine learning strategies to improve transplantation outcomes.Kidney Int2021
33676872Transcriptomic analysis of Nodal - and BMP- associated genes during development to the juvenile seastar in Parvulastra exigua (Asterinidae).Mar Genomics2021
33534532Trash or Treasure: Rescuing Discard Kidneys.Transplantation2021
33922315Metabolic Signatures in Coronary Artery Disease: Results from the BioHEART-CT Study.Cells2021
33531041Clonal evolution in liver cancer at single-cell and single-variant resolution.J Hematol Oncol2021
34824223A benchmark study of simulation methods for single-cell RNA sequencing data.Nat Commun2021
34404777A hierarchical approach to removal of unwanted variation for large-scale metabolomics data.Nat Commun2021
34844647treekoR: identifying cellular-to-phenotype associations by elucidating hierarchical relationships in high-dimensional cytometry data.Genome Biol2021
33961869Jurisdictional inequalities in deceased donor kidney allocation in Australia.Kidney Int2021
33148975Integrative Analysis of Prognostic Biomarkers for Acute Rejection in Kidney Transplant Recipients.Transplantation2021
32567229scClassify: sample size estimation and multiscale classification of cells using single and multiple reference.Mol Syst Biol2020
33203358LC-N2G: a local consistency approach for nutrigenomics data analysis.BMC Bioinformatics2020
32661426Investigating higher-order interactions in single-cell data with scHOT.Nat Methods2020
32339242Transcriptomic analysis of sea star development through metamorphosis to the highly derived pentameral body plan with a focus on neural transcription factors.DNA Res2020
32527931CD103+ tumor-resident CD8+ T cell numbers underlie improved patient survival in oropharyngeal squamous cell carcinoma.J Immunother Cancer2020
32353146CiteFuse enables multi-modal analysis of CITE-seq data.Bioinformatics2020
31078527Multi-omic Profiling Reveals Dynamics of the Phased Progression of Pluripotency.Cell Syst2019
31874628scReClassify: post hoc cell type classification of single-cell rNA-seq data.BMC Genomics2019
31870280scDC: single cell differential composition analysis.BMC Bioinformatics2019
31870278Autoencoder-based cluster ensembles for single-cell RNA-seq data analysis.BMC Bioinformatics2019
31679996Metabolites downstream of predicted loss-of-function variants inform relationship to disease.Mol Genet Metab2019
31795494Analysis of the Whole-Exome Sequencing of Tumor and Circulating Tumor DNA in Metastatic Melanoma.Cancers (Basel)2019
29993676AdaSampling for Positive-Unlabeled and Label Noise Learning With Bioinformatics Applications.IEEE Trans Cybern2019
30099703An Uncertainty Visual Analytics Framework for fMRI Functional Connectivity.Neuroinformatics2019
30137247Impact of similarity metrics on single-cell RNA-seq data clustering.Brief Bioinform2019
31531674Evaluating stably expressed genes in single cells.Gigascience2019
31099962QCMAP: An Interactive Web-Tool for Performance Diagnosis and Prediction of LC-MS Systems.Proteomics2019
31040191One-Time Fecal Immunochemical Screening for Advanced Colorectal Neoplasia in Patients with CKD (DETECT Study).J Am Soc Nephrol2019
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Collaborators

Richard A Scolyer
Co-authored papers 13
Terence P Speed
Co-authored papers 6
Gregory A Wray
Duke University
Co-authored papers 5
Mark R Segal
University of California san francisco
Co-authored papers 5
Terence P Speed
Walter and Eliza Hall Institute of Medical Research
Co-authored papers 4
Francine Z Marques
Monash University
Co-authored papers 4
Yasushi Okazaki
Intractable Disease Research Center, Graduate School of Medicine, Juntendo University
Co-authored papers 3
Yoshihide Hayashizaki
Center for Integrative Medical Sciences
Co-authored papers 3
Marc R Wilkins
University of New South Wales
Co-authored papers 3
Agnes C Paquet
Universite Cote d'Azur, CNRS UMR5
Co-authored papers 3
Gordon K Smyth
The University of Melbourne
Co-authored papers 2
Wing Hung Wong
Stanford University
Co-authored papers 2
Ru-Fang Yeh
Genentech Inc.
Co-authored papers 2
Ian B Hickie
Co-authored papers 2
Joshua W K Ho
The University of Hong Kong
Co-authored papers 2
Jianhua Zhang
University of Texas MD Anderson Cancer Center
Co-authored papers 1
Andrej Sali (CM4AI)
University of California San Francisco
Co-authored papers 1
Virginia D Winn
Stanford University
Co-authored papers 1
Susan McDonagh
Raigmore Hospital
Co-authored papers 1
Graeme J Stewart
Co-authored papers 1
Cindy A Hunt
University of California san francisco
Co-authored papers 1
Wolfgang Huber
Technische Universitat Munchen
Co-authored papers 1
Mark J Cowley
Children's Cancer Institute, Lowy Cancer Research Centre
Co-authored papers 1
Mark C Gillies
The University of Sydney Save Sight Institute
Co-authored papers 1
Homer A Boushey
University of California san francisco
Co-authored papers 1
John C Marioni
Cancer Research UK Cambridge Institute, University of Cambridge
Co-authored papers 1
Peter Hersey
Co-authored papers 1
Vincent J Carey
Brigham and Women's Hospital, Harvard Medical School
Co-authored papers 1
David R Booth
Co-authored papers 1
Kristina Hanspers
Gladstone Institutes
Co-authored papers 1
Release 1.2