Author details

Full Name

Jeffrey D Jensen

Affiliation

ORCID

Career Start Year

2005

Papers

131

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37503016	A simulation framework for modeling the within-patient evolutionary dynamics of SARS-CoV-2.		2023
37950882	A Simulation Framework for Modeling the Within-Patient Evolutionary Dynamics of SARS-CoV-2.		2023
37090643	Protective effect of pre-existing natural immunity in a nonhuman primate reinfection model of congenital cytomegalovirus infection.		2023
37090533	Developing an evolutionary baseline model for humans: jointly inferring purifying selection with population history.		2023
36829044	Population genetic concerns related to the interpretation of empirical outliers and the neglect of common evolutionary processes.		2023
37398347	Evaluating power to detect recurrent selective sweeps under increasingly realistic evolutionary null models.		2023
37018331	Developing an appropriate evolutionary baseline model for the study of SARS-CoV-2 patient samples.		2023
36952570	Interpreting the pervasive observation of U-shaped Site Frequency Spectra.	PLoS Genet	2023
36572441	Population Genetic Considerations Regarding Evidence for Biased Mutation Rates in Arabidopsis thaliana.		2023
37071785	Developing an Appropriate Evolutionary Baseline Model for the Study of Human Cytomegalovirus.		2023
37128989	Developing an Evolutionary Baseline Model for Humans: Jointly Inferring Purifying Selection with Population History.		2023
36790107	The Impact of Sample Size and Population History on Observed Mutational Spectra: A Case Study in Human and Chimpanzee Populations.		2023
35202407	Soft selective sweeps: Addressing new definitions, evaluating competing models, and interpreting empirical outliers.	PLoS Genetics	2022
35639797	Recommendations for improving statistical inference in population genomics.	PLoS Biol	2022
35738021	How Can We Resolve Lewontin's Paradox?	Genome Biology and Evolution	2022
35675379	On the prospect of achieving accurate joint estimation of selection with population history.	Genome Biology and Evolution	2022
35862520	A chromosomal inversion contributes to divergence in multiple traits between deer mouse ecotypes.	Science	2022
35778972	Some complexities in interpreting apparent effects of hitchhiking: A commentary on Gompert et al.Â (2022).	Molecular Ecology	2022
35045267	Identification of a Permissive Secondary Mutation That Restores the Enzymatic Activity of Oseltamivir Resistance Mutation H275Y.	J Virol	2022
34987185	Inferring the distribution of fitness effects in patient-sampled and experimental virus populations: two case studies.	Heredity	2022
35253851	The impact of frequently neglected model violations on bacterial recombination rate estimation: a case study in Mycobacterium canettii and Mycobacterium tuberculosis.	G3: Genes, Genomes, Genetics	2022
33060846	The population genomics of within-host Mycobacterium tuberculosis.	Heredity	2021
37089401	Effects of Selection at Linked Sites on Patterns of Genetic Variability.		2021
33591322	The Impact of Purifying and Background Selection on the Inference of Population History: Problems and Prospects.	Molecular Biology and Evolution	2021
34125884	Revisiting the notion of deleterious sweeps.	Genetics	2021
34207868	Common Polymorphisms in the Glycoproteins of Human Cytomegalovirus and Associated Strain-Specific Immunity.	Viruses	2021
33930288	The genomic history of the Aegean palatial civilizations.	Cell	2021
33501439	The impact of purifying and background selection on the inference of population history: problems and prospects.		2021
31399719	The population genetics of crypsis in vertebrates: recent insights from mice, hares, and lizards.	Heredity	2020
32251365	Considering mutational meltdown as a potential SARS-CoV-2 treatment strategy.	Heredity	2020
32233086	Evaluating the contributions of purifying selection and progeny-skew in dictating within-host Mycobacterium tuberculosis evolution.	Evolution; international journal of organic evolution	2020
32396636	Considering Genomic Scans for Selection as Coalescent Model Choice.	Genome Biology and Evolution	2020
31874930	A consideration of within-host human cytomegalovirus genetic variation.	Proceedings of the National Academy of Sciences of the United States of America	2020
32282064	Convergent evolution of seasonal camouflage in response to reduced snow cover across the snowshoe hare range.	Evolution; international journal of organic evolution	2020
32152045	Toward an Evolutionarily Appropriate Null Model: Jointly Inferring Demography and Purifying Selection.	Genetics	2020
33047822	Imposed mutational meltdown as an antiviral strategy.	Evolution; international journal of organic evolution	2020
30705186	Linking a mutation to survival in wild mice.	Science	2019
30460993	The importance of the Neutral Theory in 1968 and 50 years on: A response to Kern and Hahn 2018.	Evolution; international journal of organic evolution	2019
30381484	Mutations in Influenza A Virus Neuraminidase and Hemagglutinin Confer Resistance against a Broadly Neutralizing Hemagglutinin Stem Antibody.	J Virol	2019
30651284	Inferring Demography and Selection in Organisms Characterized by Skewed Offspring Distributions.	Genetics	2019
29466705	Synonymous Mutations at the Beginning of the Influenza A Virus Hemagglutinin Gene Impact Experimental Fitness.	J Mol Biol	2018
30169784	The Demographic History of African Drosophila melanogaster.	Genome Biology and Evolution	2018
29930138	Adaptive introgression underlies polymorphic seasonal camouflage in snowshoe hares.	Science	2018
30592709	On the unfounded enthusiasm for soft selective sweeps II: Examining recent evidence from humans, flies, and viruses.	PLoS Genetics	2018
30127529	The fitness landscape of the codon space across environments.	Heredity	2018
29346646	The Evolutionary History of Nebraska Deer Mice: Local Adaptation in the Face of Strong Gene Flow.	Molecular Biology and Evolution	2018
29382090	On the Demographic and Selective Forces Shaping Patterns of Human Cytomegalovirus Variation within Hosts.	Pathogens	2018
29127263	Coalescent Processes with Skewed Offspring Distributions and Nonequilibrium Demography.	Genetics	2018
27974561	On the Analysis of Intrahost and Interhost Viral Populations: Human Cytomegalovirus as a Case Study of Pitfalls and Expectations.	Journal of Virology	2017
28854600	The Combined Effect of Oseltamivir and Favipiravir on Influenza A Virus Evolution.	Genome Biology and Evolution	2017