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Author Details

Rutger A Vos
Naturalis Biodiversity Center
2003
41
16
PMIDPaper TitleJournal TitlePublished Year
36939357Single-Cell Genomics Reveals the Divergent Mitochondrial Genomes of Retaria (Foraminifera and Radiolaria).mBio2023
35111406Sixteenth-century tomatoes in Europe: who saw them, what they looked like, and where they came from.PeerJ2022
35780674Refining bulk segregant analyses: ontology-mediated discovery of flowering time genes in Brassica oleracea.Plant Methods2022
34772985First report of mitochondrial COI in foraminifera and implications for DNA barcoding.Sci Rep2021
33932029Symbiont switching and trophic mode shifts in Orchidaceae.New Phytol2021
34522372Temporal and palaeoclimatic context of the evolution of insular woodiness in the Canary Islands.Ecol Evol2021
32308977BioHackathon 2015: Semantics of data for life sciences and reproducible research.F1000Res2020
33218142Ontogeny and Anatomy of the Dimorphic Pitchers of <i>Nepenthes rafflesiana</i> Jack.Plants (Basel)2020
32313624Organic matter reduces the amount of detectable environmental DNA in freshwater.Ecol Evol2020
29215778Declines in moth populations stress the need for conserving dark nights.Glob Chang Biol2018
30013185Evolutionary dynamics of mycorrhizal symbiosis in land plant diversification.Sci Rep2018
29874797phylotaR: An Automated Pipeline for Retrieving Orthologous DNA Sequences from GenBank in R.Life (Basel)2018
29603138A roadmap for global synthesis of the plant tree of life.Am J Bot2018
27292571Algorithmic single-locus species delimitation: effects of sampling effort, variation and nonmonophyly in four methods and 1870 species of beetles.Mol Ecol Resour2017
28335712Exploring the evolutionary origin of floral organs of Erycina pusilla, an emerging orchid model system.BMC Evol Biol2017
27616324Toward a Self-Updating Platform for Estimating Rates of Speciation and Migration, Ages, and Relationships of Taxa.Syst Biol2017
27190702Incorporation of an invasive plant into a native insect herbivore food web.PeerJ2016
27765035BioVeL: a virtual laboratory for data analysis and modelling in biodiversity science and ecology.BMC Ecol2016
27842607The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants.J Biomed Semantics2016
27498812Scalariform-to-simple transition in vessel perforation plates triggered by differences in climate during the evolution of Adoxaceae.Ann Bot2016
27288478Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera.Syst Biol2016
26023286Integrating and visualizing primary data from prospective and legacy taxonomic literature.Biodivers Data J2015
26713234Emerging semantics to link phenotype and environment.PeerJ2015
24495517BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.J Biomed Semantics2014
25039268Exploring genetic variation in the tomato (Solanum section Lycopersicon) clade by whole-genome sequencing.Plant J2014
25057255Enriched biodiversity data as a resource and service.Biodivers Data J2014
24502833The HTS barcode checker pipeline, a tool for automated detection of illegally traded species from high-throughput sequencing data.BMC Bioinformatics2014
23398680The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies.J Biomed Semantics2013
24565381Advancing data reuse in phyloinformatics using an ontology-driven Semantic Web approach.BMC Med Genomics2013
24297900The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system.Proc Natl Acad Sci U S A2013
23668630Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient.BMC Bioinformatics2013
22357728NeXML: rich, extensible, and verifiable representation of comparative data and metadata.Syst Biol2012
23088596Sharing and re-use of phylogenetic trees (and associated data) to facilitate synthesis.BMC Res Notes2012
22332238Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics.Bioinformatics2012
21352572BIO::Phylo-phyloinformatic analysis using perl.BMC Bioinformatics2011
21806842The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications.J Biomed Semantics2011
20546608Evolution of embryonic developmental period in the marine bird families Alcidae and Spheniscidae: roles for nutrition and predation?BMC Evol Biol2010
20727200The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*.J Biomed Semantics2010
17392779The delayed rise of present-day mammals.Nature2007
19455222Estimating the relative order of speciation or coalescence events on a given phylogeny.Evol Bioinform Online2007
12775525Accelerated likelihood surface exploration: the likelihood ratchet.Syst Biol2003
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Collaborators

Database Center for Life Science
Co-authored papers 6
National Institute for Molecular Genetics "Romeo ed Enrica Invernizzi"
Co-authored papers 6
Database Center for Life Science, Joint Support-Center for Data Science Research
Co-authored papers 5
Universidad Politecnica de Madrid (UPM)
Co-authored papers 5
Wageningen University & Research
Co-authored papers 5
Database Center for Life Science, Joint Support-Center for Data Science Research
Co-authored papers 5
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Tohoku University Graduate School of Medicine
Co-authored papers 4
European Bioinformatics Institute
Co-authored papers 4
Duke University
Co-authored papers 4
J. Craig Venter Institute
Co-authored papers 4
King Abdullah University of Science and Technology
Co-authored papers 4
Co-authored papers 3
university of california san diego
Co-authored papers 3
National Institute of Genetics
Co-authored papers 3
Japan Science and Technology Agency
Co-authored papers 3
carnegie mellon university - 1 rue Michel Servet CH-1 Geneva 4
Co-authored papers 3
Osaka University
Co-authored papers 3
University of Kansas
Co-authored papers 3
Norwegian University of Science and Technology
Co-authored papers 3
DKFZ - German Cancer Research Center
Co-authored papers 2
The University of Manchester
Co-authored papers 2
Co-authored papers 2
Hospital Universitario y Politecnico la Fe
Co-authored papers 2
Co-authored papers 2
Hiroshima University
Co-authored papers 2
Renaissance Computing Institute, University of North Carolina
Co-authored papers 2
The University of Manchester
Co-authored papers 2
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