Author details

Full Name

Szymon M KieÅ¿basa

Affiliation

ORCID

Career Start Year

2000

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37493974	Acquisition of a glycosylated B-cell receptor drives follicular lymphoma toward a dark zone phenotype.		2023
37594459	Correction: Inflammatory and tolerogenic myeloid cells determine outcome following human allergen challenge.		2023
37085135	Cancer-Associated Fibroblasts Are Key Determinants of Cancer Cell Invasion in the Earliest Stage of Colorectal Cancer.	Cell Mol Gastroenterol Hepatol	2023
36728839	Prostate-specific membrane antigen (PSMA) as a potential target for molecular imaging and treatment in bone and soft tissue sarcomas.		2023
34546342	The Cortisol Response of Male and Female Choroidal Endothelial Cells: Implications for Central Serous Chorioretinopathy.	J Clin Endocrinol Metab	2022
36367948	Single-cell immune profiling reveals thymus-seeding populations, T cell commitment, and multilineage development in the human thymus.	Science immunology	2022
36139642	MDMX Regulates Transcriptional Activity of p53 and FOXO Proteins to Stimulate Proliferation of Melanoma Cells.	Cancers (Basel)	2022
35404341	Low-input Nucleus Isolation and Multiplexing with Barcoded Antibodies of Mouse Sympathetic Ganglia for Single-nucleus RNA Sequencing.	Journal of Visualized Experiments	2022
33840130	Hippocampal glucocorticoid target genes associated with enhancement of memory consolidation.	Eur J Neurosci	2022
35245938	Alternative Polyadenylation Utilization Results in Ribosome Assembly and mRNA Translation Deficiencies in a Model for Muscle Aging.	J Gerontol A Biol Sci Med Sci	2022
34716584	NKG2A is a late immune checkpoint on CD8 T cells and marks repeated stimulation and cell division.	International Journal of Cancer	2022
33350510	Statistical method for modeling sequencing data from different technologies in longitudinal studies with application to Huntington disease.	Biometrical Journal	2021
32127641	Comprehensive diagnostics of acute myeloid leukemia by whole transcriptome RNA sequencing.	Leukemia	2021
34090257	Blood RNA signature RISK4LEP predicts leprosy years before clinical onset.	EBioMedicine	2021
33761980	CACTUS: integrating clonal architecture with genomic clustering and transcriptome profiling of single tumor cells.	Genome Med	2021
31291647	VprBP mitigates TGF-Î² and Activin signaling by promoting Smurf1-mediated type I receptor degradation.	J Mol Cell Biol	2020
32362897	Optimized Whole Genome Association Scanning for Discovery of HLA Class I-Restricted Minor Histocompatibility Antigens.	Front Immunol	2020
32033589	Eleven grand challenges in single-cell data science.	Genome Biol	2020
32813135	Exacerbated inflammatory signaling underlies aberrant response to BMP9 in pulmonary arterial hypertension lung endothelial cells.	Angiogenesis	2020
32842713	Age-Associated Salivary MicroRNA Biomarkers for Oculopharyngeal Muscular Dystrophy.	Int J Mol Sci	2020
31333671	Peripheral IgE Repertoires of Healthy Donors Carry Moderate Mutation Loads and Do Not Overlap With Other Isotypes.	Frontiers in Immunology	2019
30504444	RNA sequencing data integration reveals an miRNA interactome of osteoarthritis cartilage.	Ann Rheum Dis	2019
31042459	Acquired N-Linked Glycosylation Motifs in B-Cell Receptors of Primary Cutaneous B-Cell Lymphoma and the Normal B-Cell Repertoire.	J Invest Dermatol	2019
31234833	RNA-Seq in 296 phased trios provides a high-resolution map of genomic imprinting.	BMC Biol	2019
30739015	Deacetylation Inhibition Reverses PABPN1-Dependent Muscle Wasting.	iScience	2019
29247594	Genes associated with venous thromboembolism in colorectal cancer patients.	J Thromb Haemost	2018
28987003	RNA-seq analysis of Lgr6 stem cells and identification of an Lgr6 isoform.	Experimental Dermatology	2018
30309317	Integrating omics datasets with the OmicsPLS package.	BMC Bioinformatics	2018
30024899	Impact of congenital cytomegalovirus infection on transcriptomes from archived dried blood spots in relation to long-term clinical outcome.	PLoS One	2018
29929540	Transcriptional profiling and biomarker identification reveal tissue specific effects of expanded ataxin-3 in a spinocerebellar ataxia type 3 mouse model.	Mol Neurodegener	2018
30489628	The Effect of Corticosteroids on Human Choroidal Endothelial Cells: A Model to Study Central Serous Chorioretinopathy.	Investigative Ophthalmology and Visual Science	2018
30186282	Human Bone Marrow-Resident Natural Killer Cells Have a Unique Transcriptional Profile and Resemble Resident Memory CD8 T Cells.	Frontiers in Immunology	2018
30321321	Selective Glucocorticoid Receptor Modulation Prevents and Reverses Nonalcoholic Fatty Liver Disease in Male Mice.	Endocrinology	2018
29141996	The distinct transcriptomes of slow and fast adult muscles are delineated by noncoding RNAs.	FASEB J	2018
29706885	Brain Transcriptomic Analysis of Hereditary Cerebral Hemorrhage With Amyloidosis-Dutch Type.	Front Aging Neurosci	2018
27733450	New function of the myostatin/activin type I receptor (ALK4) as a mediator of muscle atrophy and muscle regeneration.	FASEB Journal	2017
27301611	ARTISAN PCR: rapid identification of full-length immunoglobulin rearrangements without primer binding bias.	British Journal of Haematology	2017
27918535	Disease variants alter transcription factor levels and methylation of their binding sites.	Nat Genet	2017
27918533	Identification of context-dependent expression quantitative trait loci in whole blood.	Nat Genet	2017
26687432	Selection patterns of B-cell receptors and the natural history of follicular lymphoma.	British Journal of Haematology	2016
26885755	Molecular signatures of age-associated chronic degeneration of shoulder muscles.	Oncotarget	2016
26964570	Integrated Whole Genome and Transcriptome Analysis Identified a Therapeutic Minor Histocompatibility Antigen in a Splice Variant of ITGB2.	Clin Cancer Res	2016
27029405	Quaking promotes monocyte differentiation into pro-atherogenic macrophages by controlling pre-mRNA splicing and gene expression.	Nature Communications	2016
26299617	Whole-transcriptome analysis of flow-sorted cervical cancer samples reveals that B cell expressed TCL1A is correlated with improved survival.	Oncotarget	2015
24509910	Two Plasmodium 6-Cys family-related proteins have distinct and critical roles in liver-stage development.	FASEB J	2014
22683086	Mutations in PIGO, a member of the GPI-anchor-synthesis pathway, cause hyperphosphatasia with mental retardation.	Am J Hum Genet	2012
22016335	CpG deamination creates transcription factor-binding sites with high efficiency.	Genome Biol Evol	2011
22419971	What it takes to understand and cure a living system: computational systems biology and a systems biology-driven pharmacokinetics-pharmacodynamics platform.	Interface Focus	2011
21209072	Adaptive seeds tame genomic sequence comparison.	Genome Res	2011
20460454	Targetfinder.org: a resource for systematic discovery of transcription factor target genes.	Nucleic Acids Research	2010