Author details

Full Name

Alexandra Zhernakova

Affiliation

ORCID

Career Start Year

2003

Papers

193

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36782070	gutSMASH predicts specialized primary metabolic pathways from the human gut microbiota.	Nat Biotechnol	2023
38042820	Health-related quality of life is linked to the gut microbiome in kidney transplant recipients.	Nat Commun	2023
37945978	Analysis of microbial composition and sharing in low-biomass human milk samples: a comparison of DNA isolation and sequencing techniques.		2023
37583444	Gut dysbiosis associates with cytokine production capacity in viral-suppressed people living with HIV.		2023
37637104	Impact of occupational pesticide exposure on the human gut microbiome.		2023
38060843	The gut microbiome across the cardiovascular risk spectrum.		2023
36958817	Faecal metabolome and its determinants in inflammatory bowel disease.		2023
37068462	The maternal gut microbiome during pregnancy and its role in maternal and infant health.		2023
37164015	Phage-display immunoprecipitation sequencing of the antibody epitope repertoire in inflammatory bowel disease reveals distinct antibody signatures.	Immunity	2023
37164013	Phage display sequencing reveals that genetic, environmental, and intrinsic factors influence variation of human antibody epitope repertoire.	Immunity	2023
37220321	Dual UHPLC-HRMS Metabolomics and Lipidomics and Automated Data Processing Workflow for Comprehensive High-Throughput Gut Phenotyping.	Anal Chem	2023
34875050	Fat metabolism is associated with telomere length in six population-based studies.	Hum Mol Genet	2022
36044594	Gut microbiome dysbiosis is associated with increased mortality after solid organ transplantation.	Science Translational Medicine	2022
35766965	The Gut Microbiome Composition Is Altered in Long-standing Type 1 Diabetes and Associates With Glycemic Control and Disease-Related Complications.	Diabetes Care	2022
35446234	Integrated fecal microbiome-metabolome signatures reflect stress and serotonin metabolism in irritable bowel syndrome.	Gut Microbes	2022
36298860	Diversity and Ecology of Phages with Genome Terminal Repeats in Fecal Metagenomes from Four Dutch Cohorts.	Viruses	2022
35948782	Genetics of irritable bowel syndrome: shifting gear via biobank-scale studies.	Nature Reviews Gastroenterology and Hepatology	2022
36216932	Influence of the microbiome, diet and genetics on inter-individual variation in the human plasma metabolome.	Nat Med	2022
35681050	Genetic, parental and lifestyle factors influence telomere length.	Communications Biology	2022
35418674	Environmental factors shaping the gut microbiome in a Dutch population.	Nature	2022
36522747	Systematic analysis of relationships between plasma branched-chain amino acid concentrations and cardiometabolic parameters: an association and Mendelian randomization study.		2022
36474346	Microbial vitamin production mediates dietary effects on diabetic risk.	Gut Microbes	2022
34792619	Environmental risk factors of type 2 diabetes-an exposome approach.	Diabetologia	2022
35227199	Correction to: Yoghurt consumption is associated with changes in the composition of the human gut microbiome and metabolome.	BMC Microbiol	2022
35021085	Discovery, diversity, and functional associations of crAss-like phages in human gut metagenomes from four Dutch cohorts.	Cell Reports	2022
35115688	Challenges and future directions for studying effects of host genetics on the gut microbiome.	Nature Genetics	2022
35114943	Yoghurt consumption is associated with changes in the composition of the human gut microbiome and metabolome.	BMC Microbiol	2022
35091264	Large HDL particles negatively associate with leukocyte counts independent of cholesterol efflux capacity: A cross sectional study in the population-based LifeLines DEEP cohort.	Atherosclerosis	2022
34950132	Circulating miRNAs as Potential Biomarkers for Celiac Disease Development.	Front Immunol	2021
33811041	Long-term dietary patterns are associated with pro-inflammatory and anti-inflammatory features of the gut microbiome.	Gut	2021
34010651	Stability of the human gut virome and effect of gluten-free diet.	Cell Reports	2021
34282338	Population-wide diversity and stability of serum antibody epitope repertoires against human microbiota.	Nat Med	2021
33737436	Lifelines COVID-19 cohort: investigating COVID-19 infection and its health and societal impacts in a Dutch population-based cohort.	BMJ Open	2021
33838112	The long-term genetic stability and individual specificity of the human gut microbiome.	Cell	2021
33462485	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Nat Genet	2021
33515008	The Composition and Metabolic Potential of the Human Small Intestinal Microbiota Within the Context of Inflammatory Bowel Disease.		2021
34040632	A Benchmark of Genetic Variant Calling Pipelines Using Metagenomic Short-Read Sequencing.	Frontiers in Genetics	2021
33831035	Patient attitudes towards faecal sampling for gut microbiome studies and clinical care reveal positive engagement and room for improvement.	PLoS ONE	2021
34323983	Association of Insulin Resistance and Type 2 Diabetes With Gut Microbial Diversity: A Microbiome-Wide Analysis From Population Studies.	JAMA Netw Open	2021
34313538	A combination of fecal calprotectin and human beta-defensin 2 facilitates diagnosis and monitoring of inflammatory bowel disease.	Gut Microbes	2021
32651235	Whole exome sequencing analyses reveal gene-microbiota interactions in the context of IBD.	Gut	2021
33331911	An association between chronic widespread pain and the gut microbiome.	Rheumatology	2021
33393726	Genetic Association of a Gain-of-Function IFNGR1 Polymorphism and the Intergenic Region LNCAROD/DKK1 With BehÃ§et's Disease.	Arthritis Rheumatol	2021
34512620	Inflammatory Protein Profiles in Plasma of Candidaemia Patients and the Contribution of Host Genetics to Their Variability.	Front Immunol	2021
34847370	Characterization of gut microbial structural variations as determinants of human bile acid metabolism.		2021
34957435	GWAS of stool frequency provides insights into gastrointestinal motility and irritable bowel syndrome.	Cell Genom	2021
34380062	Milk and bugs educate infant immune systems.	Immunity	2021
32782301	Gut microbial co-abundance networks show specificity in inflammatory bowel disease and obesity.	Nat Commun	2020
31909512	Systematic review with meta-analysis: the risks of proton pump inhibitors during pregnancy.	Alimentary Pharmacology and Therapeutics	2020
31591516	Immunochip meta-analysis in European and Argentinian populations identifies two novel genetic loci associated with celiac disease.	Eur J Hum Genet	2020