Author details

Full Name

AnÃ¡lia LourenÃ§o

Affiliation

ORCID

Career Start Year

2006

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37219498	Targeted depletion of + bacteria from a fecal microbiota using specific antibodies.		2023
34412847	A framework to extract biomedical knowledge from gluten-related tweets: The case of dietary concerns in digital era.	Artificial Intelligence in Medicine	2021
31879749	Computational resources and strategies to assess single-molecule dynamics of the translation process in S. cerevisiae.	Briefings in Bioinformatics	2021
32149650	Computational Approach to the Systematic Prediction of Glycolytic Abilities: Looking Into Human Microbiota.	IEEE/ACM Transactions on Computational Biology and Bioinformatics	2021
33576999	Computational Resources and Strategies to Construct Single-Molecule Models of FISH.	Methods in Molecular Biology	2021
32413974	Revisiting the Metabolic Capabilities of susbp. and subsp. from a Glycoside Hydrolase Perspective.	Microorganisms	2020
30884651	In silico prediction reveals the existence of potential bioactive neuropeptides produced by the human gut microbiota.		2019
29186315	Resources and tools for the high-throughput, multi-omic study of intestinal microbiota.	Briefings in Bioinformatics	2019
31236786	Next generation community assessment of biomedical entity recognition web servers: metrics, performance, interoperability aspects of BeCalm.	J Cheminform	2019
31024464	Approach for Unveiling the Glycoside Hydrolase Activities in Through a Systematic and Integrative Large-Scale Analysis.	Frontiers in Microbiology	2019
30738947	Computational prediction of the bioactivity potential of proteomes based on expert knowledge.	Journal of Biomedical Informatics	2019
30852248	Application of agent-based modelling to assess single-molecule transport across the cell envelope of E. coli.	Computers in Biology and Medicine	2019
30849608	DEWE: A novel tool for executing differential expression RNA-Seq workflows in biomedical research.	Computers in Biology and Medicine	2019
31411142	Using Twitter to Understand the Human Bowel Disease Community: Exploratory Analysis of Key Topics.	Journal of Medical Internet Research	2019
29516751	Agent-based model of diffusion of N-acyl homoserine lactones in a multicellular environment of Pseudomonas aeruginosa and Candida albicans.	Biofouling	2018
30300406	BlasterJS: A novel interactive JavaScript visualisation component for BLAST alignment results.	PLoS ONE	2018
29707185	The Evolving Role of Information Technology in Haemovigilance Systems.	Journal of Healthcare Engineering	2018
29518242	Exploring anti-quorum sensing and anti-virulence based strategies to fight Candida albicans infections: an in silico approach.	FEMS Yeast Research	2018
28114348	Polymicrobial Ventilator-Associated Pneumonia: Fighting In Vitro Candida albicans-Pseudomonas aeruginosa Biofilms with Antifungal-Antibacterial Combination Therapy.	PLoS ONE	2017
28457834	A network perspective on antimicrobial peptide combination therapies: the potential of colistin, polymyxin B and nisin.	International Journal of Antimicrobial Agents	2017
28943872	Screening of the Human Gut Metaproteome Identifies Th17-Promoting Peptides Encrypted in Proteins of Commensal Bacteria.	Frontiers in Microbiology	2017
28482090	P4P: a peptidome-based strain-level genome comparison web tool.	Nucleic Acids Research	2017
28475312	Information Retrieval and Text Mining Technologies for Chemistry.	Chem Rev	2017
28355248	Searching for new strategies against biofilm infections: Colistin-AMP combinations against Pseudomonas aeruginosa and Staphylococcus aureus single- and double-species biofilms.	PLoS ONE	2017
29220479	Collaborative relation annotation and quality analysis in Markyt environment.	Database : the journal of biological databases and curation	2017
28077565	MAHMI database: a comprehensive MetaHit-based resource for the study of the mechanism of action of the human microbiota.	Database : the journal of biological databases and curation	2017
27500859	Probiotics, gut microbiota, and their influence on host health and disease.	Molecular Nutrition and Food Research	2017
28121162	Quorum sensing inhibition in Pseudomonas aeruginosa biofilms: new insights through network mining.	Biofouling	2017
27868469	Critical review on biofilm methods.	Critical Reviews in Microbiology	2017
28025336	Construction of antimicrobial peptide-drug combination networks from scientific literature based on a semi-automated curation workflow.	Database : the journal of biological databases and curation	2016
27010507	From amino acid sequence to bioactivity: The biomedical potential of antitumor peptides.	Protein Science	2016
27140200	Heteroresistance to colistin in Klebsiella pneumoniae is triggered by small colony variants sub-populations within biofilms.	Pathogens and Disease	2016
27049044	Single Molecule Simulation of Diffusion and Enzyme Kinetics.	Journal of Physical Chemistry B	2016
27003613	Tackling probiotic and gut microbiota functionality through proteomics.	Journal of Proteomics	2016
27372059	High performance computing for three-dimensional agent-based molecular models.	Journal of Molecular Graphics and Modelling	2016
27265049	BIOMedical Search Engine Framework: Lightweight and customized implementation of domain-specific biomedical search engines.	Computer Methods and Programs in Biomedicine	2016
26515531	Computational resources and strategies to construct single-molecule metabolic models of microbial cells.	Briefings in Bioinformatics	2016
27554155	A peptidome-based phylogeny pipeline reveals differential peptides at the strain level within Bifidobacterium animalis subsp. lactis.	Food Microbiology	2016
27542845	The Markyt visualisation, prediction and benchmark platform for chemical and gene entity recognition at BioCreative/CHEMDNER challenge.	Database (Oxford)	2016
28033346	Improving Phylogeny Reconstruction at the Strain Level Using Peptidome Datasets.	PLoS Computational Biology	2016
24106130	Pathogenicity phenomena in three model systems: from network mining to emerging system-level properties.	Briefings in Bioinformatics	2015
25874228	Agent-based spatiotemporal simulation of biomolecular systems within the open source MASON framework.	BioMed Research International	2015
25817920	MorphoCol: An ontology-based knowledgebase for the characterisation of clinically significant bacterial colony morphologies.	Journal of Biomedical Informatics	2015
25480679	Marky: a tool supporting annotation consistency in multi-user and iterative document annotation projects.	Computer Methods and Programs in Biomedicine	2015
25600941	Enabling systematic, harmonised and large-scale biofilms data computation: the Biofilms Experiment Workbench.	Computer Methods and Programs in Biomedicine	2015
25961290	Extraction of pharmacokinetic evidence of drug-drug interactions from the literature.	PLoS One	2015
26651585	Data Quality in Biofilm High-Throughput Routine Analysis: Intralaboratory Protocol Adaptation and Experiment Reproducibility.	Journal of AOAC International	2015
23632294	Web scraping technologies in an API world.	Briefings in Bioinformatics	2014
25339083	An harmonised vocabulary for communicating and interchanging biofilms experimental results.	Journal of integrative bioinformatics	2014
24478124	Minimum information about a biofilm experiment (MIABiE): standards for reporting experiments and data on sessile microbial communities living at interfaces.	Pathogens and Disease	2014