Author details

Full Name

Udo Hahn

Affiliation

Friedrich Schiller University Jena

ORCID

Career Start Year

1995

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36704932	Global hypomethylation in childhood asthma identified by genome-wide DNA-methylation sequencing preferentially affects enhancer regions.	Allergy	2023
37224532	GePI: large-scale text mining, customized retrieval and flexible filtering of gene/protein interactions.	Nucleic Acids Res	2023
36763541	Phosphoproteomics Profiling Defines a Target Landscape of the Basophilic Protein Kinases AKT, S6K, and RSK in Skeletal Myotubes.	J Proteome Res	2023
36073490	GRASCCO - The First Publicly Shareable, Multiply-Alienated German Clinical Text Corpus.	Stud Health Technol Inform	2022
34042748	Pseudonymization of PHI Items in German Clinical Reports.	Stud Health Technol Inform	2021
32570340	An Evolutionary Approach to the Annotation of Discharge Summaries.	Stud Health Technol Inform	2020
32823318	Medical Information Extraction in the Age of Deep Learning.	Yearb Med Inform	2020
32932685	Optimized Identification of Advanced Chronic Kidney Disease and Absence of Kidney Disease by Combining Different Electronic Health Data Resources and by Applying Machine Learning Strategies.	J Clin Med	2020
32818467	IL4I1 Is a Metabolic Immune Checkpoint that Activates the AHR and Promotes Tumor Progression.	Cell	2020
32444788	Phosphoproteomics identifies dual-site phosphorylation in an extended basophilic motif regulating FILIP1-mediated degradation of filamin-C.	Commun Biol	2020
30923191	The PI3K and MAPK/p38 pathways control stress granule assembly in a hierarchical manner.	Life Sci Alliance	2019
31437914	Annotating German Clinical Documents for De-Identification.	Stud Health Technol Inform	2019
29677916	3000PA-Towards a National Reference Corpus of German Clinical Language.	Stud Health Technol Inform	2018
30016815	Smart Medical Information Technology for Healthcare (SMITH).	Methods Inf Med	2018
29295149	Scholarly Information Extraction Is Going to Make a Quantum Leap with PubMed Central (PMC).	Stud Health Technol Inform	2017
27869123	A systems study reveals concurrent activation of AMPK and mTOR by amino acids.	Nat Commun	2016
25991250	Sharing models and tools for processing German clinical texts.	Stud Health Technol Inform	2015
26958195	JuFiT: A Configurable Rule Engine for Filtering and Generating New Multilingual Umls Terms.	AMIA Annu Symp Proc	2015
25160251	Exploiting parallel corpora to scale up multilingual biomedical terminologies.	Stud Health Technol Inform	2014
25954371	Fostering Multilinguality in the UMLS: A Computational Approach to Terminology Expansion for Multiple Languages.	AMIA Annu Symp Proc	2014
23424141	Text and data mining for biomedical discovery.	Pac Symp Biocomput	2013
24188080	In silico approaches and the role of ontologies in aging research.	Rejuvenation Res	2013
22174293	The extraction of pharmacogenetic and pharmacogenomic relations--a case study using PharmGKB.	Pac Symp Biocomput	2012
23304300	Active Learning-based corpus annotation--the PathoJen experience.	AMIA Annu Symp Proc	2012
23025349	Validated in vitro/in vivo correlation of prolonged-release oxycodone/naloxone with differing dissolution rates in relation to gastrointestinal transit times.	Expert Opin Drug Metab Toxicol	2012
22833496	Mining the pharmacogenomics literature--a survey of the state of the art.	Brief Bioinform	2012
22541595	Towards valid and reusable reference alignments - ten basic quality checks for ontology alignments and their application to three different reference data sets.	J Biomed Semantics	2012
22355294	Genome-Wide Scale-Free Network Inference for Candida albicans.	Front Microbiol	2012
22177292	U-Compare bio-event meta-service: compatible BioNLP event extraction services.	BMC Bioinformatics	2011
22166494	Assessment of NER solutions against the first and second CALBC Silver Standard Corpus.	J Biomed Semantics	2011
22166304	Towards mature use of semantic resources for biomedical analyses.	J Biomed Semantics	2011
20183881	CALBC silver standard corpus.	J Bioinform Comput Biol	2010
20841840	Aligning UniProt and MeSH - a case study on human protein terms.	Stud Health Technol Inform	2010
19188193	High-performance gene name normalization with GeNo.	Bioinformatics	2009
19429601	MaHCO: an ontology of the major histocompatibility complex for immunoinformatic applications and text mining.	Bioinformatics	2009
18487700	Gene Regulation Ontology (GRO): design principles and use cases.	Stud Health Technol Inform	2008
18834498	Text mining for biology--the way forward: opinions from leading scientists.	Genome Biol	2008
16839808	Automatic lexeme acquisition for a multilingual medical subword thesaurus.	Int J Med Inform	2007
18693794	An ontology for major histocompatibility complex (MHC) alleles and molecules.	AMIA Annu Symp Proc	2007
17911772	A reappraisal of sentence and token splitting for life sciences documents.	Stud Health Technol Inform	2007
17911746	Large-scale evaluation of a medical cross-language information retrieval system.	Stud Health Technol Inform	2007
17625544	Text mining: powering the database revolution.	Nature	2007
17321118	Towards the ontological foundations of symbolic biological theories.	Artif Intell Med	2007
17321117	Ontological foundations for biomedical sciences.	Artif Intell Med	2007
17448242	Spatial location and its relevance for terminological inferences in bio-ontologies.	BMC Bioinformatics	2007
16298171	Towards new information resources for public health--from WordNet to MedicalWordNet.	J Biomed Inform	2006
17108620	Cross-lingual alignment of biomedical acronyms and their expansions.	Stud Health Technol Inform	2006
17108568	A language classifier that automatically divides medical documents for experts and health care consumers.	Stud Health Technol Inform	2006
17238430	Towards an upper level ontology for molecular biology.	AMIA Annu Symp Proc	2006
16964349	The semantics of procedures and diseases in SNOMED CT.	Methods Inf Med	2006

1 - 50 of 88

Yaoyun Zhang

The University of Texas School of Biomedical Informatics

Career Start Year 2015

Number of shared co-authors 0

Alejandro Rodr??guez-Gonz??lez

Centro de Tecnologia Biomedica. Universidad Politecnica de Madrid

Career Start Year 2012

Number of shared co-authors 0

Tudor Groza

Perth Children's Hospital

Career Start Year 2012

Number of shared co-authors 7

Stephen Wu

The University of Texas Health Science Center at Houston

Career Start Year 2011

Number of shared co-authors 2

Kirk Roberts

Georgia Institute of Technology, National Library of Medicine, University of Texas Health Science Center at Houston, University of Texas at Dallas

Career Start Year 2011

Number of shared co-authors 2

Ernesto Jim??nez-Ruiz

City University of London

Career Start Year 2008

Number of shared co-authors 2

Bridget T McInnes

Virginia Commonwealth University

Career Start Year 2007

Number of shared co-authors 1

??zlem Uzuner

George Mason University

Career Start Year 2006

Number of shared co-authors 4

Zhiyong Lu

National Center for Biotechnology Information, National Institutes of Health.

Career Start Year 2005

Number of shared co-authors 18

Dina Demner-Fushman

Lister Hill National Center for Biomedical Communications

Career Start Year 2004

Number of shared co-authors 5

Guergana Savova

Boston Children's Hospital, Harvard Medical School.

Career Start Year 2003

Number of shared co-authors 2

Vipul Kashyap

ICAR-National Dairy Research Institute

Career Start Year 2003

Number of shared co-authors 0

Hua Xu

Yale University

Career Start Year 2003

Number of shared co-authors 2

Serguei Pakhomov

University of Minnesota

Career Start Year 2002

Number of shared co-authors 1

Anand Kumar

Queens Medical Centre, Nottingham University Hospital NHS Trust

Career Start Year 2002

Number of shared co-authors 2

Michael Bada

Center for Health AI, University of Colorado Anschutz Medical Campus

Career Start Year 2000

Number of shared co-authors 5

Hongfang Liu

Mayo Clinic

Career Start Year 1999

Number of shared co-authors 13

Patrick Ruch

University of Applied Sciences and Arts of Western Switzerland (HES-SO).

Career Start Year 1999

Number of shared co-authors 14

Marcelo Fiszman

Pontifical Catholic University of Rio de Janeiro

Career Start Year 1998

Number of shared co-authors 1

Sonya E Shooshan

National Institutes of Health

Career Start Year 1997

Number of shared co-authors 1

James Geller

New Jersey Institute of Technology

Career Start Year 1996

Number of shared co-authors 0

Alan R Aronson

National Institutes of Health

Career Start Year 1993

Number of shared co-authors 2

Olivier Bodenreider

National Institutes of Health

Career Start Year 1993

Number of shared co-authors 7

Carol Friedman

Columbia University

Career Start Year 1990

Number of shared co-authors 4

Alexa T McCray

Columbia University in the City of New York.

Career Start Year 1990

Number of shared co-authors 0

Werner Ceusters

University at Buffalo

Career Start Year 1987

Number of shared co-authors 3

Christopher G Chute

Brown University, Brown University Warren Alpert Medical School, Dartmouth-Hitchcock Medical Center, Harvard School of Public Health, Johns Hopkins Medicine, Mayo Clinic Minnesota

Career Start Year 1985

Number of shared co-authors 6

Mark S Tuttle

Apelon Inc.

Career Start Year 1980

Number of shared co-authors 0

W John Wilbur

National Center for Biotechnology Information, National Institutes of Health

Career Start Year 1978

Number of shared co-authors 10

Alan Rector

University of Manchester