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Author Details

Xiaowei Zhan
Southwestern Medical Center, University of Texas
2012
88
34
Timothy Clark (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37934784Whole genome sequencing of 4,787 individuals identifies gene-based rare variants in age-related macular degeneration.Hum Mol Genet2024
36669682Enhanced Pathology Image Quality with Restore-Generative Adversarial Network.Am J Pathol2023
37800937Genetic determinants underlying the progressive phenotype of β-lactam/β-lactamase inhibitor resistance in <i>Escherichia coli</i>.Microbiol Spectr2023
38012144OVOL2 sustains postnatal thymic epithelial cell identity.Nat Commun2023
37956387Osteosarcoma Explorer: A Data Commons With Clinical, Genomic, Protein, and Tissue Imaging Data for Osteosarcoma Research.JCO Clin Cancer Inform2023
37619429Unsupervised domain adaptation for nuclei segmentation: Adapting from hematoxylin &amp; eosin stained slides to immunohistochemistry stained slides using a curriculum approach.Comput Methods Programs Biomed2023
37546786ScopeViewer: A Browser-Based Solution for Visualizing Spatial Transcriptomics Data.bioRxiv2023
36945650Spatial Transcriptomics Arena (STAr): an Integrated Platform for Spatial Transcriptomics Methodology Research.bioRxiv2023
37441352Ceftolozane/tazobactam heteroresistance in cystic fibrosis-related <i>Pseudomonas aeruginosa</i> infections.JAC Antimicrob Resist2023
37100227A Deep Learning Approach for Histology-Based Nucleus Segmentation and Tumor Microenvironment Characterization.Mod Pathol2023
37359721IsoAnalytics: a single-cell proteomics web server.Bioinform Adv2023
37461694Deep Learning of Cell Spatial Organizations Identifies Clinically Relevant Insights in Tissue Images.Res Sq2023
36711640IsoAnalytics: A Single-cell Proteomics Web Server.bioRxiv2023
36711614Susceptible bacteria survive antibiotic treatment in the mammalian gastrointestinal tract without evolving resistance.bioRxiv2023
36227655Clinically undetected polyclonal heteroresistance among Pseudomonas aeruginosa isolated from cystic fibrosis respiratory specimens.J Antimicrob Chemother2022
35585072Author Correction: Transforming activity of an oncoprotein-encoding circular RNA from human papillomavirus.Nat Commun2022
35777465MB-SupCon: Microbiome-based Predictive Models via Supervised Contrastive Learning.J Mol Biol2022
36002830Analysis of KIR gene variants in The Cancer Genome Atlas and UK Biobank using KIRCLE.BMC Biol2022
32810290Dominant atopy risk mutations identified by mouse forward genetic analysis.Allergy2021
33543271MB-GAN: Microbiome Simulation via Generative Adversarial Network.Gigascience2021
33713107MetaPrism: A versatile toolkit for joint taxa/gene analysis of metagenomic sequencing data.G3 (Bethesda)2021
33841507SMIXnorm: Fast and Accurate RNA-Seq Data Normalization for Formalin-Fixed Paraffin-Embedded Samples.Front Genet2021
34426515Inferring genes that escape X-Chromosome inactivation reveals important contribution of variable escape genes to sex-biased diseases.Genome Res2021
34480025Publisher Correction: GIANA allows computationally-efficient TCR clustering and multi-disease repertoire classification by isometric transformation.Nat Commun2021
34349111GIANA allows computationally-efficient TCR clustering and multi-disease repertoire classification by isometric transformation.Nat Commun2021
31844880A Bayesian zero-inflated negative binomial regression model for the integrative analysis of microbiome data.Biostatistics2021
33406427Overcoming Expressional Drop-outs in Lineage Reconstruction from Single-Cell RNA-Sequencing Data.Cell Rep2021
33469604BayesSMILES: Bayesian Segmentation Modeling for Longitudinal Epidemiological Studies.medRxiv2021
32770205Spatial molecular profiling: platforms, applications and analysis tools.Brief Bioinform2021
30617275Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.Mol Psychiatry2020
31929521VAMPr: VAriant Mapping and Prediction of antibiotic resistance via explainable features and machine learning.PLoS Comput Biol2020
31831563Investigation of Antigen-Specific T-Cell Receptor Clusters in Human Cancers.Clin Cancer Res2020
31915129Computational Staining of Pathology Images to Study the Tumor Microenvironment in Lung Cancer.Cancer Res2020
32908981The immune vulnerability landscape of the 2019 Novel Coronavirus, SARS-CoV-2.bioRxiv2020
32756942Seqminer2: an efficient tool to query and retrieve genotypes for statistical genetics analyses from biobank scale sequence dataset.Bioinformatics2020
32984844eIF5B drives integrated stress response-dependent translation of PD-L1 in lung cancer.Nat Cancer2020
32582274HARMONIES: A Hybrid Approach for Microbiome Networks Inference via Exploiting Sparsity.Front Genet2020
32466134Association Analysis and Meta-Analysis of Multi-Allelic Variants for Large-Scale Sequence Data.Genes (Basel)2020
32343676The landscape of RNA polymerase II-associated chromatin interactions in prostate cancer.J Clin Invest2020
31160809Publisher Correction: Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.Nat Genet2019
31666927<b>Assessment of circularized E7 RNA, GLUT1, and PD-L1 in anal squamous cell carcinoma</b>.Oncotarget2019
31661863Artificial Intelligence in Lung Cancer Pathology Image Analysis.Cancers (Basel)2019
31503336Type and case volume of health care facility influences survival and surgery selection in cases with early-stage non-small cell lung cancer.Cancer2019
31199919Pathology Image Analysis Using Segmentation Deep Learning Algorithms.Am J Pathol2019
31127091Transforming activity of an oncoprotein-encoding circular RNA from human papillomavirus.Nat Commun2019
30860569DEFOR: depth- and frequency-based somatic copy number alteration detector.Bioinformatics2019
29291464Corrigendum to "A mixed-effects model approach for the statistical analysis of vocal fold viscoelastic shear properties" [J. Mech. Behav. Biomed. Mater. 75 (2017) 477-485].J Mech Behav Biomed Mater2018
30016313Proper conditional analysis in the presence of missing data: Application to large scale meta-analysis of tobacco use phenotypes.PLoS Genet2018
29880288Usefulness of a Simple Algorithm to Identify Hypertensive Patients Who Benefit from Intensive Blood Pressure Lowering.Am J Cardiol2018
29549330Publisher Correction: Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.Nat Genet2018
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Collaborators

Guanghua Xiao
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Co-authored papers 27
Yang Xie
Quantitative Biomedical Research Center
Co-authored papers 27
Gon??alo R Abecasis
Regeneron Pharmaceuticals Inc.
Co-authored papers 21
Dajiang J Liu
Co-authored papers 20
Tao Wang
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Co-authored papers 13
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Co-authored papers 8
Michael Boehnke
Co-authored papers 8
Shuang Feng
Co-authored papers 7
Charles Kooperberg
Co-authored papers 7
Cristen J Willer
Co-authored papers 7
Caroline Hayward
Co-authored papers 7
Bingshan Li
Co-authored papers 7
Cornelia M van Duijn
University of Oxford
Co-authored papers 7
Panos Deloukas
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Co-authored papers 6
Frank Kee
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Heather M Stringham
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Co-authored papers 6
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Sekar Kathiresan
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Jean-Claude Tardif
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Murray H Brilliant
Marshfield Clinic Research Institute
Co-authored papers 6
Veikko Salomaa
Co-authored papers 6
John Danesh
Co-authored papers 6
Hanieh Yaghootkar
Co-authored papers 6
Jian'an Luan
Co-authored papers 6
Jean Ferrières
Co-authored papers 6
Asif Rasheed
Co-authored papers 6
Andrew J Lotery
University of Southampton
Co-authored papers 6
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