Author details

Full Name

Barry Honig

Affiliation

Columbia University Irving Medical Center

ORCID

Career Start Year

1971

Papers

294

H Index

Expertise

CM4AI Collaborator

Andrej Sali (CM4AI)

PMID	Paper Title	Journal Title	Published Year
36824919	Network-based elucidation of colon cancer drug resistance by phosphoproteomic time-series analysis.	bioRxiv	2023
37528581	Push-pull mechanics of E-cadherin ectodomains in biomimetic adhesions.	Biophys J	2023
37790387	ZEPPI: proteome-scale sequence-based evaluation of protein-protein interaction models.	Res Sq	2023
36973430	Specific regulation of BACH1 by the hotspot mutant p53<sup>R175H</sup> reveals a distinct gain-of-function mechanism.	Nat Cancer	2023
36776141	PrePCI: A structure- and chemical similarity-informed database of predicted protein compound interactions.	Protein Sci	2023
36909476	PrePPI: A structure informed proteome-wide database of protein-protein interactions.	bioRxiv	2023
36933822	PrePPI: A Structure Informed Proteome-wide Database of Protein-Protein Interactions.	J Mol Biol	2023
35253643	How clustered protocadherin binding specificity is tuned for neuronal self-/nonself-recognition.	Elife	2022
35385751	Affinity requirements for control of synaptic targeting and neuronal cell survival by heterophilic IgSF cell adhesion molecules.	Cell Rep	2022
35969779	On the formation of ordered protein assemblies in cell-cell interfaces.	Proc Natl Acad Sci U S A	2022
32929263	Oncoprotein-specific molecular interaction maps (SigMaps) for cancer network analyses.	Nat Biotechnol	2021
33744294	Integrating 3D structural information into systems biology.	J Biol Chem	2021
34686348	Synaptogenic activity of the axon guidance molecule Robo2 underlies hippocampal circuit function.	Cell Rep	2021
34272290	Sorting of cadherin-catenin-associated proteins into individual clusters.	Proc Natl Acad Sci U S A	2021
34166612	Dimerization of Cadherin-11 involves multi-site coupled unfolding and strand swapping.	Structure	2021
33053371	A Sweep of Earth's Virome Reveals Host-Guided Viral Protein Structural Mimicry and Points to Determinants of Human Disease.	Cell Syst	2021
32514796	Bi-allelic missense disease-causing variants in RPL3L associate neonatal dilated cardiomyopathy with muscle-specific ribosome biogenesis.	Hum Genet	2020
32101754	Sensing Actin Dynamics through Adherens Junctions.	Cell Rep	2020
32101743	Family-wide Structural and Biophysical Analysis of Binding Interactions among Non-clustered Î´-Protocadherins.	Cell Rep	2020
32359436	Adhesion Protein Structure, Molecular Affinities, and Principles of Cell-Cell Recognition.	Cell	2020
32358559	DIP/Dpr interactions and the evolutionary design of specificity in protein families.	Nat Commun	2020
30971825	Visualization of clustered protocadherin neuronal self-recognition complexes.	Nature	2019
31474372	A Structure-Informed Atlas of Human-Virus Interactions.	Cell	2019
31331966	<i>Trans</i>-endocytosis elicited by nectins transfers cytoplasmic cargo, including infectious material, between cells.	J Cell Sci	2019
28961121	Mutli-Features Prediction of Protein Translational Modification Sites.	IEEE/ACM Trans Comput Biol Bioinform	2018
30157419	Intrinsic DNA Shape Accounts for Affinity Differences between Hox-Cofactor Binding Sites.	Cell Rep	2018
30137012	Integration of Multi-omics Data for Gene Regulatory Network Inference and Application to Breast Cancer.	IEEE/ACM Trans Comput Biol Bioinform	2018
30057206	Mechanotransduction by PCDH15 Relies on a Novel cis-Dimeric Architecture.	Neuron	2018
30467080	Neuron-Subtype-Specific Expression, Interaction Affinities, and Specificity Determinants of DIP/Dpr Cell Recognition Proteins.	Neuron	2018
30467079	Interactions between the Ig-Superfamily Proteins DIP-Î± and Dpr6/10 Regulate Assembly of Neural Circuits.	Neuron	2018
29691319	Spatial and temporal organization of cadherin in punctate adherens junctions.	Proc Natl Acad Sci U S A	2018
29742438	Homophilic and Heterophilic Interactions of Type II Cadherins Identify Specificity Groups Underlying Cell-Adhesive Behavior.	Cell Rep	2018
29307589	Pathogenic IgG4 autoantibodies from endemic pemphigus foliaceus recognize a desmoglein-1 conformational epitope.	J Autoimmun	2018
27784673	Silencing c-Myc translation as a therapeutic strategy through targeting PI3KÎ´ and CK1Îµ in hematological malignancies.	Blood	2017
28121514	Genetic Drivers of Kidney Defects in the DiGeorge Syndrome.	N Engl J Med	2017
29087338	Protocadherin <i>cis</i>-dimer architecture and recognition unit diversity.	Proc Natl Acad Sci U S A	2017
29229851	Structure-based prediction of ligand-protein interactions on a genome-wide scale.	Proc Natl Acad Sci U S A	2017
28973932	Discovery of an O-mannosylation pathway selectively serving cadherins and protocadherins.	Proc Natl Acad Sci U S A	2017
29040720	Genome-wide prediction of minor-groove electrostatic potential enables biophysical modeling of protein-DNA binding.	Nucleic Acids Res	2017
28512129	Mammalian <i>O</i>-mannosylation of cadherins and plexins is independent of protein <i>O</i>-mannosyltransferases 1 and 2.	J Biol Chem	2017
28743640	Structural origins of clustered protocadherin-mediated neuronal barcoding.	Semin Cell Dev Biol	2017
27908641	Free Energy Perturbation Calculation of Relative Binding Free Energy between Broadly Neutralizing Antibodies and the gp120 Glycoprotein of HIV-1.	J Mol Biol	2017
26178156	A hybrid method for protein-protein interface prediction.	Protein Sci	2016
27936040	A High-Throughput Strategy for Dissecting Mammalian Genetic Interactions.	PLoS One	2016
27644106	Molecular basis of sidekick-mediated cell-cell adhesion and specificity.	Elife	2016
27782885	Î³-Protocadherin structural diversity and functional implications.	Elife	2016
27626385	Acetylation-regulated interaction between p53 and SET reveals a widespread regulatory mode.	Nature	2016
27770567	A computational interactome and functional annotation for the human proteome.	Elife	2016
27334919	Lipids Regulate Lck Protein Activity through Their Interactions with the Lck Src Homology 2 Domain.	J Biol Chem	2016
27298358	Structural basis of adhesive binding by desmocollins and desmogleins.	Proc Natl Acad Sci U S A	2016

1 - 50 of 294

Edda Kloppmann

Institute for Advanced Study (TUM-IAS), TUM (Technische Universitat Munchen)

Career Start Year 2005

Number of shared co-authors 5

Matteo Dal Peraro

Institute of Bioengineering

Career Start Year 2001

Number of shared co-authors 7

Judith Klein-Seetharaman

School of Molecular Sciences & College of Health Solutions, Arizona State University

Career Start Year 1999

Number of shared co-authors 3

Michael Feig

Michigan State University

Career Start Year 1998

Number of shared co-authors 3

Marc F Lensink

University Lille, CNRS

Career Start Year 1996

Number of shared co-authors 6

Mallur S Madhusudhan

Indian Institute of Science Education and Research Pune

Career Start Year 1996

Number of shared co-authors 10

Shira Albeck

Weizmann Institute of Science

Career Start Year 1996

Number of shared co-authors 18

Jeffery G Saven

University of Pennsylvania

Career Start Year 1996

Number of shared co-authors 1

Orly Dym

Weizmann Institute of Science

Career Start Year 1995

Number of shared co-authors 18

Mark A Williams

Harwell Science & Innovation Campus

Career Start Year 1994

Number of shared co-authors 3

Huan-Xiang Zhou

University of Illinois Chicago

Career Start Year 1993

Number of shared co-authors 8

Carlos J Camacho

University of Pittsburgh

Career Start Year 1990

Number of shared co-authors 3

Paul A Bates

The Francis Crick Institute

Career Start Year 1989

Number of shared co-authors 6

Miriam Eisenstein

Weizmann Institute of Science

Career Start Year 1988

Number of shared co-authors 6

David Baker

University of Washington

Career Start Year 1988

Number of shared co-authors 32

Mark S Johnson

Abo Akademi University

Career Start Year 1985

Number of shared co-authors 1

William F DeGrado

Department of Pharmaceutical Chemistry, University of California san francisco

Career Start Year 1982

Number of shared co-authors 7

Ruth Nussinov

Sackler School of Medicine, Tel Aviv University

Career Start Year 1980

Number of shared co-authors 9

Haruki Nakamura

Institute for Protein Research, Osaka University

Career Start Year 1980

Number of shared co-authors 11

David A Case

Rutgers University

Career Start Year 1977

Number of shared co-authors 14

David S Moss

Institute of Structural and Molecular Biology, University of London

Career Start Year 1976

Number of shared co-authors 1

Michael J E Sternberg

Imperial College London

Career Start Year 1976

Number of shared co-authors 9

Shoshana J Wodak

VIB-VUB Center for Structural Biology

Career Start Year 1975

Number of shared co-authors 13

Charles L Brooks

University of Michigan ann arbor

Career Start Year 1974

Number of shared co-authors 7

George N Phillips

Rice University

Career Start Year 1974

Number of shared co-authors 14

Tom L Blundell

Heartand Lung Research Institute, University of Cambridge

Career Start Year 1971

Number of shared co-authors 5

Joel L Sussman

Weizmann Institute of Science

Career Start Year 1971

Number of shared co-authors 23

Sung-Hou Kim

University of California berkeley

Career Start Year 1967

Number of shared co-authors 19

Robert M Stroud

University of California San Francisco

Career Start Year 1965

Number of shared co-authors 8

David Eisenberg

university of california los angeles

Career Start Year 1963

Number of shared co-authors 5

row(s) 1 - 30 of 30

Lawrence Shapiro

Zuckerman Mind Brain Behaviour Institute

Co-authored papers 55

Diana Murray

Columbia University Irving Medical Center

Co-authored papers 19

Oliver J Harrison

University Hospital Southampton

Co-authored papers 17

Gaetano T Montelione

Rensselaer Polytechnic Institute

Co-authored papers 13

Thomas B Acton

Center for Advanced Biotechnology and Medicine, The State University of New Jersey

Co-authored papers 10

Nir Ben-Tal

Co-authored papers 10

Rong Xiao

School of Public Health, Capital Medical University

Co-authored papers 9

Michael K Gilson

University of California

Co-authored papers 8

Tom Maniatis

College des medecins du Quebec

Co-authored papers 8

Emil Alexov

Co-authored papers 7

Burkhard Rost

Technical University of Munich (TUM)

Co-authored papers 6

Andrea Califano

Columbia University

Co-authored papers 6

Michael A Kennedy

Miami University

Co-authored papers 4

Sagi Shapira

Institute for Genomic Medicine, Columbia University

Co-authored papers 4

Howook Hwang

Co-authored papers 4

Matthew P Jacobson

Department of Pharmaceutical Chemistry, University of California san francisco

Co-authored papers 4

John R Cort

Pacific Northwest National Laboratory

Co-authored papers 4

Raquel Norel

IBM T.J. Watson Research Center

Co-authored papers 4

Bissan Al-Lazikani

The University of Texas MD Anderson Cancer Center

Co-authored papers 3

Yuanpeng J Huang

Center for Advanced Biotechnology and Medicine, The State University of New Jersey

Co-authored papers 3

Cinque Soto

Co-authored papers 3

Bridget Carragher

Columbia University

Co-authored papers 3

Marco Punta

Co-authored papers 2

Hugo J Bellen

Baylor College of Medicine

Co-authored papers 2

Anna Marie Pyle

Yale University, USA Howard Hughes Medical Institute

Co-authored papers 2

Yang Shen

National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK)

Co-authored papers 2

Hao Fan

College of Biotechnology and Bioengineering, Zhejiang University of Technology

Co-authored papers 2

Fred E Cohen

University of California san francisco

Co-authored papers 2

Ingrid Y Y Koh

Columbia University Center for Computational Biology and Bioinformatics (C2B2)

Co-authored papers 2

Ritu Shastry

Co-authored papers 2

1 - 30

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