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Author Details

Miljan Simonovi??
University of Illinois at Chicago
1998
52
29
PMIDPaper TitleJournal TitlePublished Year
36929010Structural basis for the tRNA-dependent activation of the terminal complex of selenocysteine synthesis in humans.Nucleic Acids Res2023
37659604PaxDb 5.0: Curated Protein Quantification Data Suggests Adaptive Proteome Changes in Yeasts.Mol Cell Proteomics2023
35709277Structure of the mammalian ribosome as it decodes the selenocysteine UGA codon.Science2022
30476243STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets.Nucleic Acids Res2019
31285607Cryo-EM structures reveal coordinated domain motions that govern DNA cleavage by Cas9.Nat Struct Mol Biol2019
28534666Human aminoacyl-tRNA synthetases in diseases of the nervous system.RNA Biol2018
29555379On elongation factor eEFSec, its role and mechanism during selenium incorporation into nascent selenoproteins.Biochim Biophys Acta Gen Subj2018
27924014The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible.Nucleic Acids Res2017
28808125Insights into substrate promiscuity of human seryl-tRNA synthetase.RNA2017
26869582The crystal structure of human GlnRS provides basis for the development of neurological disorders.Nucleic Acids Res2016
27645994Selenoprotein Gene Nomenclature.J Biol Chem2016
27708257Crystal structures of the human elongation factor eEFSec suggest a non-canonical mechanism for selenocysteine incorporation.Nat Commun2016
27576344Structural basis for early-onset neurological disorders caused by mutations in human selenocysteine synthase.Sci Rep2016
26704982The crystal structure of yeast mitochondrial ThrRS in complex with the canonical threonine tRNA.Nucleic Acids Res2016
25352553STRING v10: protein-protein interaction networks, integrated over the tree of life.Nucleic Acids Res2015
26655472Perturbation of the Conformational Dynamics of an Active-Site Loop Alters Enzyme Activity.Structure2015
26115735Selenoprotein biosynthesis defect causes progressive encephalopathy with elevated lactate.Neurology2015
25656970Version 4.0 of PaxDb: Protein abundance data, integrated across model organisms, tissues, and cell-lines.Proteomics2015
24996302Interactions of epigallo-catechin 3-gallate and ovalbumin, the major allergen of egg white.Food Chem2014
25190812Structural asymmetry of the terminal catalytic complex in selenocysteine synthesis.J Biol Chem2014
23203871STRING v9.1: protein-protein interaction networks, with increased coverage and integration.Nucleic Acids Res2013
24127424The synthesis of methylated, phosphorylated, and phosphonated 3'-aminoacyl-tRNA(Sec) mimics.Chemistry2013
22343532Yeast mitochondrial threonyl-tRNA synthetase recognizes tRNA isoacceptors by distinct mechanisms and promotes CUN codon reassignment.Proc Natl Acad Sci U S A2012
23275319Synthesis and decoding of selenocysteine and human health.Croat Med J2012
22773845The mechanism of pre-transfer editing in yeast mitochondrial threonyl-tRNA synthetase.J Biol Chem2012
22535208PaxDb, a database of protein abundance averages across all three domains of life.Mol Cell Proteomics2012
21045058The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored.Nucleic Acids Res2011
21716279PSICQUIC and PSISCORE: accessing and scoring molecular interactions.Nat Methods2011
21321019An unusual tRNAThr derived from tRNAHis reassigns in yeast mitochondria the CUN codons to threonine.Nucleic Acids Res2011
20079712Ankyrin recognizes both surface character and shape of the 14-15 di-repeat of beta-spectrin.Biochem Biophys Res Commun2010
20602460The crystal structure of ribonuclease A in complex with thymidine-3'-monophosphate provides further insight into ligand binding.Proteins2010
20623998Human SepSecS or SLA/LP: selenocysteine formation and autoimmune hepatitis.Biol Chem2010
19903474Distinct genetic code expansion strategies for selenocysteine and pyrrolysine are reflected in different aminoacyl-tRNA formation systems.FEBS Lett2010
18940858STRING 8--a global view on proteins and their functional interactions in 630 organisms.Nucleic Acids Res2009
19595805A structural view on the mechanism of the ribosome-catalyzed peptide bond formation.Biochim Biophys Acta2009
19608919The human SepSecS-tRNASec complex reveals the mechanism of selenocysteine formation.Science2009
19168783The structure of the ankyrin-binding site of beta-spectrin reveals how tandem spectrin-repeats generate unique ligand-binding properties.Blood2009
18187576Cross-crystal averaging reveals that the structure of the peptidyl-transferase center is the same in the 70S ribosome and the 50S subunit.Proc Natl Acad Sci U S A2008
18818369Peptidyl-CCA deacylation on the ribosome promoted by induced fit and the O3'-hydroxyl group of A76 of the unacylated A-site tRNA.RNA2008
16945920Structure of the calmodulin alphaII-spectrin complex provides insight into the regulation of cell plasticity.J Biol Chem2006
15993378Lack of involvement of strand s1'A of the viral serpin CrmA in anti-apoptotic or caspase-inhibitory functions.Arch Biochem Biophys2005
15155623Comparative analysis of EspF from enteropathogenic and enterohemorrhagic Escherichia coli in alteration of epithelial barrier function.Infect Immun2004
12860985Canonical inhibitor-like interactions explain reactivity of alpha1-proteinase inhibitor Pittsburgh and antithrombin with proteinases.J Biol Chem2003
12530532Pigment epithelium-derived factor (PEDF), a serpin with potent anti-angiogenic and neurite outgrowth-promoting properties.Biol Chem2002
12270703Atomic resolution structure of a succinimide intermediate in E.coli CheY.J Mol Biol2002
11562499Crystal structure of human PEDF, a potent anti-angiogenic and neurite growth-promoting factor.Proc Natl Acad Sci U S A2001
11735395Calcium coordination and pH dependence of the calcium affinity of ligand-binding repeat CR7 from the LRP. Comparison with related domains from the LRP and the LDL receptor.Biochemistry2001
11410584A distinct meta-active conformation in the 1.1-A resolution structure of wild-type ApoCheY.J Biol Chem2001
11053845Crystallization and preliminary X-ray diffraction analysis of a recombinant cysteine-free mutant of crmA.Acta Crystallogr D Biol Crystallogr2000
10975564Crystal structure of viral serpin crmA provides insights into its mechanism of cysteine proteinase inhibition.Protein Sci2000
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Collaborators

Co-authored papers 9
University of Wurzburg
Co-authored papers 6
Novo Nordisk Foundation Center for Protein Research, University of Copenhagen
Co-authored papers 6
University of Zurich
Co-authored papers 3
University of California san francisco
Co-authored papers 2
INSERM, Universite de Strasbourg
Co-authored papers 2
University of Rome 'Tor Vergata'
Co-authored papers 1
.The Emmes Corporation
Co-authored papers 1
university of california los angeles
Co-authored papers 1
Hospital Rey Juan Carlos
Co-authored papers 1
Simon Fraser University
Co-authored papers 1
University of Toronto
Co-authored papers 1
Max Delbruck Center for Molecular Medicine (MDC)
Co-authored papers 1
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 1
Oregon Health and Science University
Co-authored papers 1
EMBL's European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 1
Center for Biological Sequence Analysis, Technical University of Denmark
Co-authored papers 1
University of Edinburgh
Co-authored papers 1
European Bioinformatics Institute
Co-authored papers 1
ICBMS UMR CNRS 5246, University Lyon 1
Co-authored papers 1
Montefiore Medical Center, Albert Einstein College of Medicine
Co-authored papers 1
European Bioinformatics Institute
Co-authored papers 1
Institute for Biomedicine, Affiliated Institute of the University of Lubeck
Co-authored papers 1
The Netherlands Cancer Institute
Co-authored papers 1
Cancer Research Centre (IBMCC/CSIC/USAL/IBSAL)
Co-authored papers 1
Co-authored papers 1
Cambridge University and Cambridge University Hospitals NHS Foundation Trust
Co-authored papers 1
South Australian Health and Medical Research Institute
Co-authored papers 1
Samuel Lunenfeld Research Institute
Co-authored papers 1
German Cancer Research Center (DKFZ)
Co-authored papers 1