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Author Details

Dinesh Gupta
International Centre for Genetic Engineering and Biotechnology (ICGEB)
2000
132
25
PMIDPaper TitleJournal TitlePublished Year
35014595Lead optimization, pharmacophore development and scaffold design of protein kinase CK2 inhibitors as potential COVID-19 therapeutics.J Biomol Struct Dyn2023
38075203Multi-omics approach for identifying CNV-associated lncRNA signatures with prognostic value in prostate cancer.Noncoding RNA Res2023
37703712Machine learning analysis of lung squamous cell carcinoma gene expression datasets reveals novel prognostic signatures.Comput Biol Med2023
38063048In silico evaluation of 4-thiazolidinone-based inhibitors against the receptor for advanced glycation end products (RAGE).J Biomol Struct Dyn2023
37728544<i>In silico</i> studies of alkaloids and their derivatives against N-acetyltransferase EIS protein from <i>Mycobacterium tuberculosis</i>.J Biomol Struct Dyn2023
37872744VirulentPred 2.0: An improved method for prediction of virulent proteins in bacterial pathogens.Protein Sci2023
36970842Identification of new oxospiro chromane quinoline-carboxylate antimalarials that arrest parasite growth at ring stage.J Biomol Struct Dyn2023
37131651MmcA is an electron conduit that facilitates both intracellular and extracellular electron transport in <i>Methanosarcina acetivorans</i>.bioRxiv2023
37065061Identification of Novel Tau-Tubulin Kinase 2 Inhibitors Using Computational Approaches.ACS Omega2023
36752362Designing of new tetrahydro-β-carboline-based ABCG2 inhibitors using 3D-QSAR, molecular docking, and DFT tools.J Biomol Struct Dyn2023
36660820The dual role of a multi-heme cytochrome in methanogenesis: MmcA is important for energy conservation and carbon metabolism in Methanosarcina acetivorans.Mol Microbiol2023
36928613Deciphering novel common gene signatures for rheumatoid arthritis and systemic lupus erythematosus by integrative analysis of transcriptomic profiles.PLoS One2023
32851910Insights into the structural and dynamical changes of spike glycoprotein mutations associated with SARS-CoV-2 host receptor binding.J Biomol Struct Dyn2022
35444689In-Silico Functional Annotation of <i>Plasmodium falciparum</i> Hypothetical Proteins to Identify Novel Drug Targets.Front Genet2022
35616371Bazedoxifene, a Postmenopausal Drug, Acts as an Antimalarial and Inhibits Hemozoin Formation.Microbiol Spectr2022
35380107An Archaea-specific <i>c</i>-type cytochrome maturation machinery is crucial for methanogenesis in <i>Methanosarcina acetivorans</i>.Elife2022
35765592Natural selection plays a significant role in governing the codon usage bias in the novel SARS-CoV-2 variants of concern (VOC).PeerJ2022
35401674Anti-Fungal Drug Anidulafungin Inhibits SARS-CoV-2 Spike-Induced Syncytia Formation by Targeting ACE2-Spike Protein Interaction.Front Genet2022
35465161Machine learning assisted analysis of breast cancer gene expression profiles reveals novel potential prognostic biomarkers for triple-negative breast cancer.Comput Struct Biotechnol J2022
35416716Latent Tuberculosis Infection Diagnosis among Household Contacts in a High Tuberculosis-Burden Area: a Comparison between Transcript Signature and Interferon Gamma Release Assay.Microbiol Spectr2022
36408789Strand 1A variant in neuroserpin shows increased aggregation and no loss of inhibition: implication in ameliorating polymerization to retain activity.Biosci Rep2022
35875174Design and evaluation of pyrimidine derivatives as potent inhibitors of ABCG2, a breast cancer resistance protein.3 Biotech2022
36238365Heme Detoxification Protein (<i>Pf</i>HDP) is essential for the hemoglobin uptake and metabolism in <i>Plasmodium falciparum</i>.FASEB Bioadv2022
33618621Structural stability predictions and molecular dynamics simulations of RBD and HR1 mutations associated with SARS-CoV-2 spike glycoprotein.J Biomol Struct Dyn2022
35113898DriverFuse: An R package for analysis of next-generation sequencing datasets to identify cancer driver fusion genes.PLoS One2022
35265451Insights into the structure and dynamics of SARS-CoV-2 spike glycoprotein double mutant L452R-E484Q.3 Biotech2022
34308797Structural insights into the mechanism of human methyltransferase hPRMT4.J Biomol Struct Dyn2022
33034255Ligand-based pharmacophore modeling of TNF-α to design novel inhibitors using virtual screening and molecular dynamics.J Biomol Struct Dyn2022
33140703Targeting SARS-CoV-2 nucleocapsid oligomerization: Insights from molecular docking and molecular dynamics simulations.J Biomol Struct Dyn2022
33131721Screening Malaria-box compounds to identify potential inhibitors against SARS-CoV-2 M<sup>pro</sup>, using molecular docking and dynamics simulation studies.Eur J Pharmacol2021
35670460Plasmodium falciparum metacaspase-2 capture its natural substrate in a non-canonical way.J Biochem2021
35424125A molecular journey to check the conformational dynamics of tau tubulin kinase 2 mutations associated with Alzheimer's disease.RSC Adv2021
33521362Unsupervised subtyping and methylation landscape of pancreatic ductal adenocarcinoma.Heliyon2021
33893722Detection of truncated isoforms of human neuroserpin lacking the reactive center loop: Implications in noninhibitory role.IUBMB Life2021
33606519Simultaneous Inhibition of SARS-CoV-2 Entry Pathways by Cyclosporine.ACS Chem Neurosci2021
34604555Targeting cathepsins: A potential link between COVID-19 and associated neurological manifestations.Heliyon2021
34392148Identification of COVID-19 prognostic markers and therapeutic targets through meta-analysis and validation of Omics data from nasopharyngeal samples.EBioMedicine2021
34297427The structural, functional, and dynamic effect of Tau tubulin kinase1 upon a mutation: A neuro-degenerative hotspot.J Cell Biochem2021
34066964Computational Design of Novel Allosteric Inhibitors for <i>Plasmodium falciparum</i> DegP.Molecules2021
33934569A Plasmodium falciparum protein tyrosine phosphatase inhibitor identified from the ChEMBL-NTD database blocks parasite growth.FEBS Open Bio2021
34093642Machine Learning Assisted Prediction of Prognostic Biomarkers Associated With COVID-19, Using Clinical and Proteomics Data.Front Genet2021
33981864<i>Plasmodium falciparum</i> DDX17 is an RNA helicase crucial for parasite development.Biochem Biophys Rep2021
34054125Photoferrotrophy and phototrophic extracellular electron uptake is common in the marine anoxygenic phototroph Rhodovulum sulfidophilum.ISME J2021
34278137Atomic Resolution Homology Models and Molecular Dynamics Simulations of <i>Plasmodium falciparum</i> Tubulins.ACS Omega2021
31903842<i>In-silico</i> profiling and structural insights into the impact of nSNPs in the <i>P. falciparum acetyl-CoA transporter</i> gene to understand the mechanism of drug resistance in malaria.J Biomol Struct Dyn2021
31563868Classifying juvenile onset primary open angle glaucoma using cluster analysis.Br J Ophthalmol2020
32049018Plasmodium Condensin Core Subunits SMC2/SMC4 Mediate Atypical Mitosis and Are Essential for Parasite Proliferation and Transmission.Cell Rep2020
31954927Changes in strand 6B and helix B during neuroserpin inhibition: Implication in severity of clinical phenotype.Biochim Biophys Acta Proteins Proteom2020
33061946Artificial Intelligence-Based Classification of Chest X-Ray Images into COVID-19 and Other Infectious Diseases.Int J Biomed Imaging2020
33106323Plasmodium DEH is ER-localized and crucial for oocyst mitotic division during malaria transmission.Life Sci Alliance2020
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Collaborators

Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 3
University of Pennsylvania Perelman School of Medicine
Co-authored papers 3
Center for Bioinformatics, University of Pennsylvania
Co-authored papers 3
University Hospitals Bristol and Weston NHS Foundation Trust
Co-authored papers 3
Perelman School of Medicine, University of Pennsylvania Philadelphia
Co-authored papers 3
University of Georgia
Co-authored papers 3
Co-authored papers 3
Co-authored papers 3
University of Pennsylvania
Co-authored papers 3
University of Pennsylvania
Co-authored papers 3
Perelman School of Medicine, University of Pennsylvania
Co-authored papers 3
Julius-Maximilians-Universitat Wurzburg
Co-authored papers 3
The Alexander Silberman Institute of Life Science, Hebrew University of Jerusalem
Co-authored papers 2
University of Colorado Anschutz Medical Campus
Co-authored papers 2
Co-authored papers 2
University of Pennsylvania
Co-authored papers 2
Co-authored papers 2
National Center for Biotechnology Information, National Institutes of Health
Co-authored papers 2
Oregon Health & Science University, University of California Berkeley
Co-authored papers 2
Children's Hospital of Philadelphia
Co-authored papers 2
Nursing and Health SciencesMonash UniversityClaytonVictoriaAustralia.
Co-authored papers 1
Co-authored papers 1
National Centre for Cell Science, SP Pune University Campus
Co-authored papers 1
Wellcome Sanger Institute
Co-authored papers 1
Indian Institute of Science
Co-authored papers 1
Earlham Institute
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The University of Queensland
Co-authored papers 1
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King Abdullah University of Science and Technology
Co-authored papers 1