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Author Details

Milana Frenkel-Morgenstern
Bar-Ilan University
2005
55
20
PMIDPaper TitleJournal TitlePublished Year
36628954The landscape of differential splicing and transcript alternations in severe COVID-19 infection.FEBS J2023
36851647The Landscape of Expressed Chimeric Transcripts in the Blood of Severe COVID-19 Infected Patients.Viruses2023
36633099Functional and regulatory impact of chimeric RNAs in human normal and cancer cells.Wiley Interdiscip Rev RNA2023
34579972Evolutionary impact of chimeric RNAs on generating phenotypic plasticity in human cells.Trends Genet2022
35406656The Landscape of Novel Expressed Chimeric RNAs in Rheumatoid Arthritis.Cells2022
35871889Fusion proteins mediate alternation of protein interaction networks in cancers.Adv Protein Chem Struct Biol2022
35892966Incipient Sympatric Speciation and Evolution of Soil Bacteria Revealed by Metagenomic and Structured Non-Coding RNAs Analysis.Biology (Basel)2022
35891299Clinical and Molecular Characterization of a Rare Case of BNT162b2 mRNA COVID-19 Vaccine-Associated Myositis.Vaccines (Basel)2022
36288695tRNA methylation resolves codon usage bias at the limit of cell viability.Cell Rep2022
35062735The Association of Previous Vaccination with Live-Attenuated Varicella Zoster Vaccine and COVID-19 Positivity: An Israeli Population-Based Study.Vaccines (Basel)2022
34875133Detection of gene mutations and gene-gene fusions in circulating cell-free DNA of glioblastoma patients: an avenue for clinically relevant diagnostic analysis.Mol Oncol2022
34608759Seasonal UV exposure and vitamin D: association with the dynamics of COVID-19 transmission in Europe.FEBS Open Bio2022
33166390COVID19 Drug Repository: text-mining the literature in search of putative COVID19 therapeutics.Nucleic Acids Res2021
33621437The use of aspirin for primary prevention of cardiovascular disease is associated with a lower likelihood of COVID-19 infection.FEBS J2021
33756061Non-optimal codon usage preferences of coronaviruses determine their promiscuity for infecting multiple hosts.FEBS J2021
33802569mRNA-lncRNA Co-Expression Network Analysis Reveals the Role of lncRNAs in Immune Dysfunction during Severe SARS-CoV-2 Infection.Viruses2021
33660221Specific Susceptibility to COVID-19 in Adults with Down Syndrome.Neuromolecular Med2021
34859212ChiTaH: a fast and accurate tool for identifying known human chimeric sequences from high-throughput sequencing data.NAR Genom Bioinform2021
34458728Computational analysis of sense-antisense chimeric transcripts reveals their potential regulatory features and the landscape of expression in human cells.NAR Genom Bioinform2021
34797469Correction to: Specific Susceptibility to COVID-19 in Adults with Down Syndrome.Neuromolecular Med2021
34503137Emerging Role of Chimeric RNAs in Cell Plasticity and Adaptive Evolution of Cancer Cells.Cancers (Basel)2021
34196123EvoProDom: evolutionary modeling of protein families by assessing translocations of protein domains.FEBS Open Bio2021
32526960Immunoinformatics and Structural Analysis for Identification of Immunodominant Epitopes in SARS-CoV-2 as Potential Vaccine Targets.Vaccines (Basel)2020
31728960Identification of Chimeric RNAs Using RNA-Seq Reads and Protein-Protein Interactions of Translated Chimeras.Methods Mol Biol2020
31996469Current Perspectives on Circulating Tumor DNA, Precision Medicine, and Personalized Clinical Management of Cancer.Mol Cancer Res2020
31747015ChiTaRS 5.0: the comprehensive database of chimeric transcripts matched with druggable fusions and 3D chromatin maps.Nucleic Acids Res2020
32918447SCOR: A secure international informatics infrastructure to investigate COVID-19.J Am Med Inform Assoc2020
32973219Design principles of gene evolution for niche adaptation through changes in protein-protein interaction networks.Sci Rep2020
32986022Detection of Cell-Free DNA in Blood Plasma Samples of Cancer Patients.J Vis Exp2020
31003445Altered Expression and Localization of Tumor Suppressive E3 Ubiquitin Ligase SMURF2 in Human Prostate and Breast Cancer.Cancers (Basel)2019
31437145ProtFus: A Comprehensive Method Characterizing Protein-Protein Interactions of Fusion Proteins.PLoS Comput Biol2019
31222142The chromatin remodeler Chd1 regulates cohesin in budding yeast and humans.Sci Rep2019
29734340Art in Science Competition invites artworks to the annual exhibition on ISMB 2018 in Chicago.PLoS Comput Biol2018
29899086Modulation of Cellular CpG DNA Methylation by Kaposi's Sarcoma-Associated Herpesvirus.J Virol2018
29549310Adaptive Transcriptome Profiling of Subterranean Zokor, Myospalax baileyi, to High- Altitude Stresses in Tibet.Sci Rep2018
29623191Art in Science Competition invites artworks to the annual exhibition on ISMB 2018 in Chicago.F1000Res2018
27899596ChiTaRS-3.1-the enhanced chimeric transcripts and RNA-seq database matched with protein-protein interactions.Nucleic Acids Res2017
28549153ChiPPI: a novel method for mapping chimeric protein-protein interactions uncovers selection principles of protein fusion events in cancer.Nucleic Acids Res2017
27339131Transcriptome, genetic editing, and microRNA divergence substantiate sympatric speciation of blind mole rat, Spalax.Proc Natl Acad Sci U S A2016
25414346ChiTaRS 2.1--an improved database of the chimeric transcripts and RNA-seq data with novel sense-antisense chimeric RNA transcripts.Nucleic Acids Res2015
26140378The UGG Isoacceptor of tRNAPro Is Naturally Prone to Frameshifts.Int J Mol Sci2015
26009254Maintenance of protein synthesis reading frame by EF-P and m(1)G37-tRNA.Nat Commun2015
23143107ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data.Nucleic Acids Res2013
22373820Genes adopt non-optimal codon usage to generate cell cycle-dependent oscillations in protein levels.Mol Syst Biol2012
22689780Novel domain combinations in proteins encoded by chimeric transcripts.Bioinformatics2012
22588898Chimeras taking shape: potential functions of proteins encoded by chimeric RNA transcripts.Genome Res2012
21647378Common peptides study of aminoacyl-tRNA synthetases.PLoS One2011
19820112Dynamic Proteomics: a database for dynamics and localizations of endogenous fluorescently-tagged proteins in living human cells.Nucleic Acids Res2010
19583438Intra-protein compensatory mutations analysis highlights the tRNA recognition regions in aminoacyl-tRNA synthetases.J Biomol Struct Dyn2009
18192060Presence of tRNA-dependent pathways correlates with high cysteine content in methanogenic Archaea.Trends Genet2008
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Collaborators

Alfonso Valencia
Josep Carreras Leukaemia Research Institute (IJC)
Co-authored papers 6
Assaf Gottlieb
Center for Precision Health, University of Texas Health Science Center at Houston
Co-authored papers 2
Stylianos E Antonarakis
Co-authored papers 2
Lars Juhl Jensen
Novo Nordisk Foundation Center for Protein Research, University of Copenhagen
Co-authored papers 2
Yann Herault
Institut Clinique de la Souris (ICS), Universite de Strasbourg, CNRS, INSERM
Co-authored papers 2
Jaime Prilusky
Weizmann Institute of Science
Co-authored papers 2
Baba Maiyaki Musa
Bayero University Kano
Co-authored papers 1
William C Mobley
University of California San Diego
Co-authored papers 1
Marie M??an
Bern University Hospital, University of Bern
Co-authored papers 1
Trevor Cohen
University of Washington (A.M.U., University of Washington (J.S.
Co-authored papers 1
Xiaoqian Jiang
Carnegie Mellon University, The University of Texas Health Science Center at Houston, University of California San Diego
Co-authored papers 1
Luigia Scudeller
IRCCS Azienda Ospedaliero-Universitaria di Bologna
Co-authored papers 1
Mamta Puppala
Houston Methodist Neal Cancer Center
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Hua Xu
Yale University
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Jean-Pierre Hubaux
EPFL.
Co-authored papers 1
Rory Johnson
Co-authored papers 1
Heidi J Sofia
National Human Genome Research Institute
Co-authored papers 1
Fabian Prasser
Berlin Institute of Health at Charite - Universitatsmedizin Berlin
Co-authored papers 1
Stephen T C Wong
Houston Methodist Research Institute
Co-authored papers 1
Yulia A Medvedeva
Research Center of Biotechnology RAS, Russian Academy of Sciences
Co-authored papers 1
Gregory J Riggins
Co-authored papers 1
Juan R Troncoso-Pastoriza
EPFL.
Co-authored papers 1
Roderic Guigó
Co-authored papers 1
Arif Harmanci
The University of Texas Health Science Center at Houston
Co-authored papers 1
Bradley A Malin
Vanderbilt University
Co-authored papers 1
David Karasik
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Miran Kim
Ulsan National Institute of Science and Technology
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Raphaelle Beau-Lejdstrom
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Release 1.2