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Author Details

Sami Kilpinen
University of Helsinki
2002
30
19
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36875157Tumor-independent Detection of Inherited Mismatch Repair Deficiency for the Diagnosis of Lynch Syndrome with High Specificity and Sensitivity.Cancer Res Commun2023
36620996Transcriptomic analyses reveal three distinct molecular subgroups of Merkel cell carcinoma with differing prognoses.Int J Cancer2023
35892849Activation of Oncogenic and Immune-Response Pathways Is Linked to Disease-Specific Survival in Merkel Cell Carcinoma.Cancers (Basel)2022
35815619Gata2, Nkx2-2 and Skor2 form a transcription factor network regulating development of a midbrain GABAergic neuron subtype with characteristics of REM-sleep regulatory neurons.Development2022
26300000Aberrant RNA splicing in cancer; expression changes and driver mutations of splicing factor genes.Oncogene2016
24651574Biclustering methods: biological relevance and application in gene expression analysis.PLoS One2014
24687856A novel transcript, VNN1-AB, as a biomarker for colorectal cancer.Int J Cancer2014
23831030Facilitates chromatin transcription complex is an "accelerator" of tumor transformation and potential marker and target of aggressive cancers.Cell Rep2013
24349659Extracellular membrane vesicles from umbilical cord blood-derived MSC protect against ischemic acute kidney injury, a feature that is lost after inflammatory conditioning.J Extracell Vesicles2013
21453538Alignment of gene expression profiles from test samples against a reference database: New method for context-specific interpretation of microarray data.BioData Min2011
22087255Characterization of non-specific cytotoxic cell receptor protein 1: a new member of the lectin-type subfamily of F-box proteins.PLoS One2011
21829378LGI2 truncation causes a remitting focal epilepsy in dogs.PLoS Genet2011
21955394Classification of unknown primary tumors with a data-driven method based on a large microarray reference database.Genome Med2011
21677534SATB2 in combination with cytokeratin 20 identifies over 95% of all colorectal carcinomas.Am J Surg Pathol2011
21365010GTI: a novel algorithm for identifying outlier gene expression profiles from integrated microarray datasets.PLoS One2011
20439473First analysis of a bacterial collagen-binding protein with collagen Toolkits: promiscuous binding of YadA to collagens may explain how YadA interferes with host processes.Infect Immun2010
21082043Integrative functional genomics analysis of sustained polyploidy phenotypes in breast cancer cells identifies an oncogenic profile for GINS2.Neoplasia2010
21151926Analysis of kinase gene expression patterns across 5681 human tissue samples reveals functional genomic taxonomy of the kinome.PLoS One2010
20876804Fibroblast growth factor receptor 4 regulates tumor invasion by coupling fibroblast growth factor signaling to extracellular matrix degradation.Cancer Res2010
20444257Array-based gene expression, CGH and tissue data defines a 12q24 gain in neuroblastic tumors with prognostic implication.BMC Cancer2010
19208124Comparison of Affymetrix data normalization methods using 6,926 experiments across five array generations.BMC Bioinformatics2009
19272768The transcription factor Sox11 is a prognostic factor for improved recurrence-free survival in epithelial ovarian cancer.Eur J Cancer2009
18314910High-resolution copy number and gene expression microarray analyses of head and neck squamous cell carcinoma cell lines of tongue and larynx.Genes Chromosomes Cancer2008
18803840Systematic bioinformatic analysis of expression levels of 17,330 human genes across 9,783 samples from 175 types of healthy and pathological tissues.Genome Biol2008
18455992Application of active and kinase-deficient kinome collection for identification of kinases regulating hedgehog signaling.Cell2008
18454307Role of ErbB4 in breast cancer.J Mammary Gland Biol Neoplasia2008
18627292Gene expression changes associated with the anti-angiogenic activity of kallikrein-related peptidase 3 (KLK3) on human umbilical vein endothelial cells.Biol Chem2008
17079440TMPRSS2 fusions with oncogenic ETS factors in prostate cancer involve unbalanced genomic rearrangements and are associated with HDAC1 and epigenetic reprogramming.Cancer Res2006
16037637NMD microarray analysis for rapid genome-wide screen of mutated genes in cancer.Cell Oncol2005
12492251CD14 and TNfa promoter polymorphisms in patients with acute arthritis. Special reference to development of chronic spondyloarthropathy.Scand J Rheumatol2002
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Collaborators

Olli Kallioniemi
Karolinska Institute
Co-authored papers 15
Kristiina Iljin
VTT Technical Research Centre of Finland Ltd
Co-authored papers 5
Darran P O'Connor
UCD Conway Institute, University College Dublin
Co-authored papers 2
Donal J Brennan
National Centre for Peritoneal Malignancy, Mater Misericordiae University Hospital
Co-authored papers 2
Karin Jirstr??m
Lund University
Co-authored papers 2
Carl A K Borrebaeck
Lund University
Co-authored papers 2
Elmar Bucher
Co-authored papers 2
William M Gallagher
All-Island Cancer Research Institute, UCD Conway Institute, University College Dublin
Co-authored papers 2
Hans Kristian Moen Vollan
F Hoffmann-La Roche Ltd
Co-authored papers 1
Mathias Uhl??n
KTH Royal Institute of Technology
Co-authored papers 1
Jianmin Wang
Roswell Park Comprehensive Cancer Center
Co-authored papers 1
Anna Asplund
Uppsala University
Co-authored papers 1
Caroline Kampf
Uppsala University
Co-authored papers 1
Elton Rexhepaj
UCD Conway Institute, University College Dublin
Co-authored papers 1
Michael J Buck
Jacobs School of Medicine and Biomedical Sciences, University at Buffalo
Co-authored papers 1
Kari Alitalo
Wihuri Research Institute
Co-authored papers 1
Kristina Magnusson
Uppsala University
Co-authored papers 1
Jennifer J Rilstone
Institute of Medical Science, University of Toronto
Co-authored papers 1
Gerrit A Meijer
The Netherlands Cancer Institute
Co-authored papers 1
Rut Klinger
UCD Conway Institute, University College Dublin
Co-authored papers 1
Richard W Farndale
Co-authored papers 1
Helgi Birgisson
The Icelandic Cancer Registry
Co-authored papers 1
Aarno Palotie
Co-authored papers 1
Hendrik G Stunnenberg
Co-authored papers 1
Kirsha Naicker
Co-authored papers 1
Elinor K Karlsson
Co-authored papers 1
Sharon F McGee
The Ottawa Hospital Cancer Centre
Co-authored papers 1
Jeroen A C M Goos
Karolinska Institutet
Co-authored papers 1
Kenneth Wester
Uppsala University
Co-authored papers 1
Sanjay Navani
Breach Candy Hospital and Research Centre
Co-authored papers 1
Release 1.2