Skip to Main Content

Author Details

Andrew D Farmer
National Center for Genome Resources
1997
106
44
PMIDPaper TitleJournal TitlePublished Year
36946261A view of the pan-genome of domesticated Cowpea (Vigna unguiculata [L.] Walp.).Plant Genome2024
36495448Plant Single-Cell/Nucleus RNA-seq Workflow.Methods Mol Biol2023
37971715Data sharing and ontology use among agricultural genetics, genomics, and breeding databases and resources of the Agbiodata Consortium.Database (Oxford)2023
37207325Genome Context Viewer (GCV) version 2: enhanced visual exploration of multiple annotated genomes.Nucleic Acids Res2023
37005409Major proliferation of transposable elements shaped the genome of the soybean rust pathogen Phakopsora pachyrhizi.Nat Commun2023
37364097Hiding in plain sight: Genome-wide recombination and a dynamic accessory genome drive diversity in <i>Fusarium oxysporum</i> f.sp. <i>ciceris</i>.Proc Natl Acad Sci U S A2023
36681082Cell-specific pathways recruited for symbiotic nodulation in the Medicago truncatula legume.Mol Plant2023
35037201Doing Genetic and Genomic Biology Using the Legume Information System and Associated Resources.Methods Mol Biol2022
35471600Alfalfa (Medicago sativa L.) pho2 mutant plants hyperaccumulate phosphate.G3 (Bethesda)2022
36355753Ten simple rules for developing visualization tools in genomics.PLoS Comput Biol2022
36321199Cell-specific pathways recruited for symbiotic nodulation in the Medicago truncatula legume.Mol Plant2022
33422696Single-nucleus RNA and ATAC sequencing reveals the impact of chromatin accessibility on gene expression in Arabidopsis roots at the single-cell level.Mol Plant2021
34491200Vision, challenges and opportunities for a Plant Cell Atlas.Elife2021
34518223Legacy genetics of <i>Arachis cardenasii</i> in the peanut crop shows the profound benefits of international seed exchange.Proc Natl Acad Sci U S A2021
33957908The genome of a wild Medicago species provides insights into the tolerant mechanisms of legume forage to environmental stress.BMC Biol2021
32204387Biological and Cellular Functions of the Microdomain-Associated FWL/CNR Protein Family in Plants.Plants (Basel)2020
33240334Expression Partitioning of Duplicate Genes at Single Cell Resolution in <i>Arabidopsis</i> Roots.Front Genet2020
32699173Araport Lives: An Updated Framework for Arabidopsis Bioinformatics.Plant Cell2020
31017340The genome of cowpea (Vigna unguiculata [L.] Walp.).Plant J2019
31367839A genome-wide association and meta-analysis reveal regions associated with seed size in cowpea [Vigna unguiculata (L.) Walp].Theor Appl Genet2019
29071392A transcriptome-SNP-derived linkage map of Apios americana (potato bean) provides insights about genome re-organization and synteny conservation in the phaseoloid legumes.Theor Appl Genet2018
30239679AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture.Database (Oxford)2018
30229068The assembled transcriptome of the adult horn fly, <i>Haematobia irritans</i>.Data Brief2018
29522524Uneven recombination rate and linkage disequilibrium across a reference SNP map for common bean (Phaseolus vulgaris L.).PLoS One2018
29334940Correction to: The transcriptome landscape of early maize meiosis.BMC Plant Biol2018
29194466Genome Context Viewer: visual exploration of multiple annotated genomes using microsynteny.Bioinformatics2018
26913498A gapless genome sequence of the fungus Botrytis cinerea.Mol Plant Pathol2017
28347275Exploring structural variation and gene family architecture with De Novo assemblies of 15 Medicago genomes.BMC Genomics2017
29250050Anilinopyrimidine Resistance in <i>Botrytis cinerea</i> Is Linked to Mitochondrial Function.Front Microbiol2017
28687904A comparative genomic and transcriptomic analysis at the level of isolated root hair cells reveals new conserved root hair regulatory elements.Plant Mol Biol2017
27775877Genome resources for climate-resilient cowpea, an essential crop for food security.Plant J2017
26901068The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut.Nat Genet2016
28105955Small RNA profiles in soybean primary root tips under water deficit.BMC Syst Biol2016
26546515Legume information system (LegumeInfo.org): a key component of a set of federated data resources for the legume family.Nucleic Acids Res2016
27721469Genomics-assisted characterization of a breeding collection of Apios americana, an edible tuberous legume.Sci Rep2016
27193699Multiple post-domestication origins of kabuli chickpea through allelic variation in a diversification-associated transcription factor.New Phytol2016
27512984Combating a Global Threat to a Clonal Crop: Banana Black Sigatoka Pathogen Pseudocercospora fijiensis (Synonym Mycosphaerella fijiensis) Genomes Reveal Clues for Disease Control.PLoS Genet2016
25596183Transcriptome and metabolite profiling of the infection cycle of Zymoseptoria tritici on wheat reveals a biphasic interaction with plant immunity involving differential pathogen chromosomal contributions and a variation on the hemibiotrophic lifestyle definition.Plant Physiol2015
26382719The plant-specific protein FEHLSTART controls male meiotic entry, initializing meiotic synchronization in Arabidopsis.Plant J2015
26070980Making a chocolate chip: development and evaluation of a 6K SNP array for Theobroma cacao.DNA Res2015
25923345Whole genome sequencing of elite rice cultivars as a comprehensive information resource for marker assisted selection.PLoS One2015
25663138Next-generation transcriptome sequencing, SNP discovery and validation in four market classes of peanut, Arachis hypogaea L.Mol Genet Genomics2015
24465857Comprehensive transcriptome assembly of Chickpea (Cicer arietinum L.) using sanger and next generation sequencing platforms: development and applications.PLoS One2014
25551607Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data.PLoS One2014
25538716Genetic mapping of legume orthologs reveals high conservation of synteny between lentil species and the sequenced genomes of Medicago and chickpea.Front Plant Sci2014
25362847Comprehensive characterization and RNA-Seq profiling of the HD-Zip transcription factor family in soybean (Glycine max) during dehydration and salt stress.BMC Genomics2014
24885405The transcriptome landscape of early maize meiosis.BMC Plant Biol2014
24571091Genome and secretome analysis of the hemibiotrophic fungal pathogen, Moniliophthora roreri, which causes frosty pod rot disease of cacao: mechanisms of the biotrophic and necrotrophic phases.BMC Genomics2014
24416217Development of an alfalfa SNP array and its use to evaluate patterns of population structure and linkage disequilibrium.PLoS One2014
23124389A high-throughput SNP marker system for parental polymorphism screening, and diversity analysis in common bean (Phaseolus vulgaris L.).Theor Appl Genet2013
  • 1 - 50 of 106

Recommended Authors

Career Start Year 2017
Number of shared co-authors 6
The Ohio State University
Career Start Year 2012
Number of shared co-authors 0
Oregon State University
Career Start Year 2011
Number of shared co-authors 16
Institute for Information Transmission Problems of the Russian Academy of Sciences
Career Start Year 2011
Number of shared co-authors 1
Agriculture and Agri-Food Canada
Career Start Year 2011
Number of shared co-authors 0
Wageningen University and Research
Career Start Year 2010
Number of shared co-authors 0
Maize Research Institute, Beijing Academy of Agriculture and Forestry Sciences
Career Start Year 2010
Number of shared co-authors 1
College of Agriculture and Biotechnology, Zhejiang University
Career Start Year 2009
Number of shared co-authors 4
Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
Career Start Year 2007
Number of shared co-authors 1
Quadram Institute Biosciences
Career Start Year 2006
Number of shared co-authors 0
Ghent University
Career Start Year 2005
Number of shared co-authors 0
Wageningen University and Research
Career Start Year 2004
Number of shared co-authors 4
Medical University of Bialystok
Career Start Year 2004
Number of shared co-authors 0
National Center for Biotechnology Information, National Institutes of Health
Career Start Year 2003
Number of shared co-authors 6
Harvard T.H. Chan School of Public Health
Career Start Year 2003
Number of shared co-authors 2
Center for Quantitative Life Sciences, Oregon State University
Career Start Year 2002
Number of shared co-authors 5
Iowa State University
Career Start Year 2000
Number of shared co-authors 17
Boyce Thompson Institute (BTI)
Career Start Year 2000
Number of shared co-authors 19
National Marine Biodiversity Institute of Korea
Career Start Year 2000
Number of shared co-authors 4
Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
Career Start Year 1999
Number of shared co-authors 0
Nova Southeastern University
Career Start Year 1998
Number of shared co-authors 7
Institute for Integrative Genome Biology, University of California Riverside
Career Start Year 1998
Number of shared co-authors 2
Danforth Foundation
Career Start Year 1997
Number of shared co-authors 12
University of North Carolina
Career Start Year 1995
Number of shared co-authors 8
European Bioinformatics Institute
Career Start Year 1995
Number of shared co-authors 20
Center for Genomics-Enabled Plant Science, Michigan State University
Career Start Year 1991
Number of shared co-authors 11
Arizona Genomics Institute, University of Arizona
Career Start Year 1988
Number of shared co-authors 28
Carnegie Institution for Science
Career Start Year 1984
Number of shared co-authors 17
Broad Institute of MIT and Harvard
Career Start Year 1981
Number of shared co-authors 8
The Salk Institute for Biological Studies
Career Start Year 1973
Number of shared co-authors 7

Collaborators

USDA-Agricultural Research Service, Corn Insects and Crop Genetics Research Unit
Co-authored papers 23
Co-authored papers 8
USDA-ARS Corn Insects and Crop Genetics Research Unit
Co-authored papers 5
Arizona State University
Co-authored papers 5
Co-authored papers 5
Rady Children's Institute for Genomic Medicine
Co-authored papers 4
Co-authored papers 4
National Center for Genome Resources
Co-authored papers 4
USDA, Corn Insects and Crop Genetics Research Unit, Iowa State University
Co-authored papers 4
Co-authored papers 4
University of Rochester School of Medicine and Dentistry
Co-authored papers 3
Corn Insects and Crop Genetics Research Unit, USDA-ARS
Co-authored papers 3
USDA-ARS, Corn Insects and Crop Genetics Research Unit
Co-authored papers 3
Carnegie Institution for Science
Co-authored papers 3
University of California Riverside
Co-authored papers 3
University of Missouri
Co-authored papers 2
Sage Science Inc.
Co-authored papers 2
Co-authored papers 2
US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory
Co-authored papers 2
Minnesota Supercomputing Institute, University of Minnesota
Co-authored papers 2
Co-authored papers 2
University of Wisconsin-Madison
Co-authored papers 2
Co-authored papers 2
USDA, Crop Improvement Genetics Research Unit, Western Regional Research Center
Co-authored papers 2
Co-authored papers 2
Washington State University
Co-authored papers 2
Oregon State University
Co-authored papers 2
DKFZ - German Cancer Research Center
Co-authored papers 2
Lawrence Berkeley National Laboratory
Co-authored papers 2
Delphinai Corporation
Co-authored papers 2