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Author Details

Faraz Hach
University of British Columbia
1999
38
17
PMIDPaper TitleJournal TitlePublished Year
36895072Differentiation of Peritubular Myoid-Like Cells from Human Induced Pluripotent Stem Cells.Adv Biol (Weinh)2023
36546757Optimized high-throughput screening of non-coding variants identified from genome-wide association studies.Nucleic Acids Res2023
35164688Genion, an accurate tool to detect gene fusion from long transcriptomics reads.BMC Genomics2022
35747387Fast and accurate matching of cellular barcodes across short-reads and long-reads of single-cell RNA-seq experiments.iScience2022
36071171Genetic determinants of chromatin reveal prostate cancer risk mediated by context-dependent gene regulation.Nat Genet2022
35303886Fast characterization of segmental duplication structure in multiple genome assemblies.Algorithms Mol Biol2022
33975627Functional mapping of androgen receptor enhancer activity.Genome Biol2021
33532821Detecting high-scoring local alignments in pangenome graphs.Bioinformatics2021
34489572An androgen receptor switch underlies lineage infidelity in treatment-resistant prostate cancer.Nat Cell Biol2021
32259207CircMiner: accurate and rapid detection of circular RNA through splice-aware pseudo-alignment scheme.Bioinformatics2020
32029828Identification of gene signature for treatment response to guide precision oncology in clear-cell renal cell carcinoma.Sci Rep2020
32781410HASLR: Fast Hybrid Assembly of Long Reads.iScience2020
30561550lordFAST: sensitive and Fast Alignment Search Tool for LOng noisy Read sequencing Data.Bioinformatics2019
30351359Alignment-free clustering of UMI tagged DNA molecules.Bioinformatics2019
29267878Computational identification of micro-structural variations and their proteogenomic consequences in cancer.Bioinformatics2018
30011247Dynamic Alignment-Free and Reference-Free Read Compression.J Comput Biol2018
30423092Fast characterization of segmental duplications in genome assemblies.Bioinformatics2018
27531099SiNVICT: ultra-sensitive detection of single nucleotide variants and indels in circulating tumour DNA.Bioinformatics2017
28954787Mutational Analysis of Gene Fusions Predicts Novel MHC Class I-Restricted T-Cell Epitopes and Immune Signatures in a Subset of Prostate Cancer.Clin Cancer Res2017
28881988Discovery and genotyping of novel sequence insertions in many sequenced individuals.Bioinformatics2017
27776113Comparison of high-throughput sequencing data compression tools.Nat Methods2016
27587673CoLoRMap: Correcting Long Reads by Mapping short reads.Bioinformatics2016
25461772Fast and accurate mapping of Complete Genomics reads.Methods2015
26382624Robustness of Massively Parallel Sequencing Platforms.PLoS One2015
26005866Spatial genomic heterogeneity within localized, multifocal prostate cancer.Nat Genet2015
24130305ORMAN: optimal resolution of ambiguous RNA-Seq multimappings in the presence of novel isoforms.Bioinformatics2014
25357237DeeZ: reference-based compression by local assembly.Nat Methods2014
24810850mrsFAST-Ultra: a compact, SNP-aware mapper for high performance sequencing applications.Nucleic Acids Res2014
22294438Integrated genome and transcriptome sequencing identifies a novel form of hybrid and aggressive prostate cancer.J Pathol2012
23047557SCALCE: boosting sequence compression algorithms using locally consistent encoding.Bioinformatics2012
22689759Dissect: detection and characterization of novel structural alterations in transcribed sequences.Bioinformatics2012
22553170From sequence to molecular pathology, and a mechanism driving the neuroendocrine phenotype in prostate cancer.J Pathol2012
21131385Alu repeat discovery and characterization within human genomes.Genome Res2011
21586516Sensitive and fast mapping of di-base encoded reads.Bioinformatics2011
21478487Comrad: detection of expressed rearrangements by integrated analysis of RNA-Seq and low coverage genome sequence data.Bioinformatics2011
20676076mrsFAST: a cache-oblivious algorithm for short-read mapping.Nat Methods2010
20529927Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery.Bioinformatics2010
10912111[Family physician Dr. Friedrich Hach. Hospitals save--we pay the difference. Interview by Werner Loosen].MMW Fortschr Med1999
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Collaborators

Suleyman Cenk Sahinalp
National Cancer Institute, National Institutes of Health
Co-authored papers 20
Colin C Collins
University of British Columbia
Co-authored papers 12
Can Alkan
Bilkent University
Co-authored papers 11
Ibrahim Numanagi??
University of Victoria
Co-authored papers 8
Fereydoun Hormozdiari
University of California davis
Co-authored papers 6
Evan E Eichler
University of Washington
Co-authored papers 6
Iman Hajirasouliha
Institute for Computational Biomedicine
Co-authored papers 5
Andrew McPherson
Memorial Sloan Kettering Cancer Center
Co-authored papers 5
Brian McConeghy
University of British Columbia
Co-authored papers 5
Robert H Bell
University of British Columbia
Co-authored papers 5
Stanislav V Volik
University of British Columbia
Co-authored papers 5
Farhad Hormozdiari
Co-authored papers 4
Anne Haegert
University of British Columbia
Co-authored papers 4
Martin E Gleave
University of British Columbia
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Chunxiao Wu
Shandong Provincial Hospital, Cheeloo College of Medicine, Shandong University
Co-authored papers 3
Wilbert Zwart
Oncode Institute, The Netherlands Cancer Institute
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Paul C Boutros
University of California los angeles
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Alexander W Wyatt
University of British Columbia
Co-authored papers 3
Ladan Fazli
University of British Columbia
Co-authored papers 3
Robert G Bristow
University of Toronto
Co-authored papers 3
Anna Lapuk
Contextual Genomics Inc.
Co-authored papers 3
Sonal Brahmbhatt
University of British Columbia
Co-authored papers 2
Himisha Beltran
Dana-Farber Cancer Institute
Co-authored papers 2
Andries M Bergman
The Netherlands Cancer Institute Antoni van Leeuwenhoek Hospital
Co-authored papers 2
Marco A Marra
University of British Columbia
Co-authored papers 2
Amina Zoubeidi
University of British Columbia
Co-authored papers 2
Matthew L Freedman
Dana-Farber Cancer Institute
Co-authored papers 2
Fan Mo
Institute of Stem Cell and Regeneration, Chinese Academy of Sciences
Co-authored papers 2
Robert Shukin
University of British Columbia
Co-authored papers 2
Antonio Hurtado-Coll
University of British Columbia
Co-authored papers 2
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