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Author Details

Migun Shakya
Los Alamos National Laboratory
2012
25
11
PMIDPaper TitleJournal TitlePublished Year
36093336Benchmark datasets for SARS-CoV-2 surveillance bioinformatics.PeerJ2022
37938672Experimental evidence for the impact of soil viruses on carbon cycling during surface plant litter decomposition.ISME Commun2022
35561186EDGE COVID-19: a web platform to generate submission-ready genomes from SARS-CoV-2 sequencing efforts.Bioinformatics2022
36032969Intrahost SARS-CoV-2 k-mer identification method (iSKIM) for rapid detection of mutations of concern reveals emergence of global mutation patterns.bioRxiv2022
36298683Intrahost SARS-CoV-2 k-mer Identification Method (iSKIM) for Rapid Detection of Mutations of Concern Reveals Emergence of Global Mutation Patterns.Viruses2022
36380755Towards increased accuracy and reproducibility in SARS-CoV-2 next generation sequence analysis for public health surveillance.bioRxiv2022
32777813A public website for the automated assessment and validation of SARS-CoV-2 diagnostic PCR assays.Bioinformatics2021
33524010Comparative genomic and phenotypic characterization of invasive non-typhoidal Salmonella isolates from Siaya, Kenya.PLoS Negl Trop Dis2021
31538189Novel Insights Into the Spread of Enteric Pathogens Using Genomics.J Infect Dis2020
32047060A Gene Cluster That Encodes Histone Deacetylase Inhibitors Contributes to Bacterial Persistence and Antibiotic Tolerance in Burkholderia thailandensis.mSystems2020
32015354Standardized phylogenetic and molecular evolutionary analysis applied to species across the microbial tree of life.Sci Rep2020
33322070NCBI's Virus Discovery Codeathon: Building "FIVE" -The Federated Index of Viral Experiments API Index.Viruses2020
32350400The National Microbiome Data Collaborative: enabling microbiome science.Nat Rev Microbiol2020
30478230Remedial Treatment of Corroded Iron Objects by Environmental <i>Aeromonas</i> Isolates.Appl Environ Microbiol2019
31560374Machine-Learning Classification Suggests That Many Alphaproteobacterial Prophages May Instead Be Gene Transfer Agents.Genome Biol Evol2019
31527408NCBI's Virus Discovery Hackathon: Engaging Research Communities to Identify Cloud Infrastructure Requirements.Genes (Basel)2019
31608125Advances and Challenges in Metatranscriptomic Analysis.Front Genet2019
29250433Insights into origin and evolution of α-proteobacterial gene transfer agents.Virus Evol2017
34595290Brief Protocol for EDGE Bioinformatics: Analyzing Microbial and Metagenomic NGS Data.Bio Protoc2017
26763898A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling.BMC Genomics2016
27343288Functional and Evolutionary Characterization of a Gene Transfer Agent's Multilocus "Genome".Mol Biol Evol2016
25033199Improved yield of high molecular weight DNA coincides with increased microbial diversity access from iron oxide cemented sub-surface clay environments.PLoS One2014
23387867Comparative metagenomic and rRNA microbial diversity characterization using archaeal and bacterial synthetic communities.Environ Microbiol2013
24146861A multifactor analysis of fungal and bacterial community structure in the root microbiome of mature Populus deltoides trees.PLoS One2013
22443386Inter-field variability in the microbial communities of hydrothermal vent deposits from a back-arc basin.Geobiology2012
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Co-authored papers 7
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Douglas J Perkins
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John M Ong'echa
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Benjamin H McMahon
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Daniel Birnbaum
Co-authored papers 1
Ranjeet Devarakonda
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Co-authored papers 1
Prakasha Kempaiah
Co-authored papers 1
Hannah Blanco
Oak Ridge National Laboratory
Co-authored papers 1
Release 1.2