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Author Details

Chris Upton
University of Victoria
1979
137
46
PMIDPaper TitleJournal TitlePublished Year
33147627Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research.Brief Bioinform2021
34158551The first genotype II African swine fever virus isolated in Africa provides insight into the current Eurasian pandemic.Sci Rep2021
31554682Isolation and Characterization of Akhmeta Virus from Wild-Caught Rodents (<i>Apodemus</i> spp.) in Georgia.J Virol2019
31240669Bioinformatics for Analysis of Poxvirus Genomes.Methods Mol Biol2019
29277875Bioinformatic Approaches for Comparative Analysis of Viruses.Methods Mol Biol2018
30225673Complete genome sequence of a novel sea otterpox virus.Virus Genes2018
30445717Base-By-Base Version 3: New Comparative Tools for Large Virus Genomes.Viruses2018
27613417The genomes of three North American orthopoxviruses.Virus Genes2017
28407753Genomic characterization of two novel pathogenic avipoxviruses isolated from pacific shearwaters (Ardenna spp.).BMC Genomics2017
28472930Three novel Pseudomonas phages isolated from composting provide insights into the evolution and diversity of tailed phages.BMC Genomics2017
28958947Complete genomic characterisation of two novel poxviruses (WKPV and EKPV) from western and eastern grey kangaroos.Virus Res2017
28885569Re-Assembly and Analysis of an Ancient Variola Virus Genome.Viruses2017
28762208Two novel poxviruses with unusual genome rearrangements: NY_014 and Murmansk.Virus Genes2017
28685222Characterization of Eptesipoxvirus, a novel poxvirus from a microchiropteran bat.Virus Genes2017
26564428Review: Capripoxvirus Diseases: Current Status and Opportunities for Control.Transbound Emerg Dis2017
27389615Genomic characterization of a novel poxvirus from a flying fox: evidence for a new genus?J Gen Virol2016
25406173Related strains of African swine fever virus with different virulence: genome comparison and analysis.J Gen Virol2015
26243783Novel Poxvirus Infection in an Immune Suppressed Patient.Clin Infect Dis2015
26023150Genome sequence and comparative virulence of raccoonpox virus: the first North American poxvirus sequence.J Gen Virol2015
25645905Comparative analysis of the complete genome sequences of Kenyan African swine fever virus isolates within p72 genotypes IX and X.Virus Genes2015
24078045Expression of a non-coding RNA in ectromelia virus is required for normal plaque formation.Virus Genes2014
25053142Suffix tree searcher: exploration of common substrings in large DNA sequence sets.BMC Res Notes2014
24626337Prediction of steps in the evolution of variola virus host range.PLoS One2014
23142553African swine fever virus replication and genomics.Virus Res2013
22688771Bioinformatics for analysis of poxvirus genomes.Methods Mol Biol2012
22696644Paramecium bursaria chlorella virus 1 proteome reveals novel architectural and regulatory features of a giant virus.J Virol2012
21153876Characterization of indels in poxvirus genomes.Virus Genes2011
22440784It's a small world after all-viral genomics and the global dominance of viruses.Curr Opin Virol2011
22587754Base-By-Base version 2: single nucleotide-level analysis of whole viral genome alignments.Microb Inform Exp2011
22587704Prediction of a novel RNA binding domain in crocodilepox Zimbabwe Gene 157.Microb Inform Exp2011
21813608The genome of Yoka poxvirus.J Virol2011
21976639Genomic analysis of the vaccinia virus strain variants found in Dryvax vaccine.J Virol2011
21470447Genomic analysis of highly virulent Georgia 2007/1 isolate of African swine fever virus.Emerg Infect Dis2011
20171711Phylogenomic analysis of 11 complete African swine fever virus genome sequences.Virology2010
21994712JaPaFi: A Novel Program for the Identification of Highly Conserved DNA Sequences.Viruses2010
20628573Vaccinia virus-encoded ribonucleotide reductase subunits are differentially required for replication and pathogenesis.PLoS Pathog2010
19183477Sequence Searcher: A Java tool to perform regular expression and fuzzy searches of multiple DNA and protein sequences.BMC Res Notes2009
19917498Cowpox virus inhibits the transporter associated with antigen processing to evade T cell recognition.Cell Host Microbe2009
19917120Evidence for a novel gene associated with human influenza A viruses.Virol J2009
19421403Vaccinia virus G8R protein: a structural ortholog of proliferating cell nuclear antigen (PCNA).PLoS One2009
19457259KISSa: a strategy to build multiple sequence alignments from pairwise comparisons of very closely related sequences.BMC Res Notes2009
18198370Comparison of the genome sequences of non-pathogenic and pathogenic African swine fever virus isolates.J Gen Virol2008
17239238Comparative genomic analysis of the family Iridoviridae: re-annotating and defining the core set of iridovirus genes.Virol J2007
17993674Organizing and updating whole genome BLAST searches with ReHAB.Methods Mol Biol2007
18037545Genomic differences of Vaccinia virus clones from Dryvax smallpox vaccine: the Dryvax-like ACAM2000 and the mouse neurovirulent Clone-3.Vaccine2007
17650322An ectromelia virus profilin homolog interacts with cellular tropomyosin and viral A-type inclusion protein.Virol J2007
17719265Role of phages in the pathogenesis of Burkholderia, or 'Where are the toxin genes in Burkholderia phages?'.Curr Opin Microbiol2007
17069870Genomic cartography of varicella-zoster virus: a complete genome-based analysis of strain variability with implications for attenuation and phenotypic differences.Virology2007
17158512Use of modified U1 snRNAs to inhibit HIV-1 replication.Nucleic Acids Res2007
17244370GraphDNA: a Java program for graphical display of DNA composition analyses.BMC Bioinformatics2007
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Collaborators

Robert D Burke
University of Victoria
Co-authored papers 3
M Boone
University of Victoria
Co-authored papers 2
Charles Buck
Co-authored papers 2
Jo??o C Setubal
Chemistry Institute, Universidade de Sao Paulo - USP
Co-authored papers 1
Lorna Richardson
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 1
Alistair C Darby
Institute of Infection, University of Liverpool
Co-authored papers 1
Shaun R Coughlin
Co-authored papers 1
Amy G Robertson
Present address: Dxige Research Inc.
Co-authored papers 1
Jacqueline E Schein
Canada British Columbia Cancer Research Centre, University of British Columbia
Co-authored papers 1
Adrian Fritz
Co-authored papers 1
Michael Mayo
Co-authored papers 1
Obi L Griffith
Washington University
Co-authored papers 1
Steven J M Jones
University of British Columbia
Co-authored papers 1
Roseline Godbout
University of Alberta
Co-authored papers 1
Cecilia N Arighi
University of Delaware
Co-authored papers 1
Duncan Hogg
Aberdeen Royal Infirmary
Co-authored papers 1
Knut Reinert
Institut fur Informatik, Freie Universitat Berlin
Co-authored papers 1
Jared C Roach
Institute for Systems Biology
Co-authored papers 1
D Perrin
Co-authored papers 1
Nomi L Harris
Lawrence Berkely National Laboratory, Massachusetts Institute of Technology, Princeton University
Co-authored papers 1
Marco A Marra
University of British Columbia
Co-authored papers 1
Jaina Mistry
Co-authored papers 1
Alex Bateman
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 1
Nicole Redaschi
Co-authored papers 1
Ramon Flick
Co-authored papers 1
Robert A Holt
BC Cancer Research Institute
Co-authored papers 1
Robert D Finn
European Bioinformatics Institute
Co-authored papers 1
Yaron S Butterfield
Brain Tumour Foundation of Canada
Co-authored papers 1
David S Wishart
University of Alberta
Co-authored papers 1
Elodie Ghedin
National Institute of Allergy and Infectious Diseases, National Institutes of Health
Co-authored papers 1
Release 1.2