Author details

Full Name

Ruibin Xi

Affiliation

ORCID

Career Start Year

2010

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37461029	Comprehensive analysis of neoantigens derived from structural variation across whole genomes from 2528 tumors.		2023
36411190	The dynamic cellular landscape of grafts with acute rejection after heart transplantation.	Journal of Heart and Lung Transplantation	2023
37741817	TAGET: a toolkit for analyzing full-length transcripts from long-read sequencing.		2023
35177820	Author Correction: Whole-genome sequencing of 508 patients identifies key molecular features associated with poor prognosis in esophageal squamous cell carcinoma.	Cell Res	2022
35902761	The shaping of cancer genomes with the regional impact of mutation processes.	Experimental and Molecular Medicine	2022
35581192	Publisher Correction: Single-cell transcriptomic analysis suggests two molecularly distinct subtypes of intrahepatic cholangiocarcinoma.	Nature Communications	2022
36481818	Author Correction: Genomic footprints of activated telomere maintenance mechanisms in cancer.	Nat Commun	2022
35228538	Single-cell gene fusion detection by scFusion.	Nat Commun	2022
34417225	Spatiotemporal Immune Landscape of Colorectal Cancer Liver Metastasis at Single-Cell Level.	Cancer Discovery	2022
35347134	Single-cell transcriptomic analysis suggests two molecularly subtypes of intrahepatic cholangiocarcinoma.	Nature Communications	2022
34865746	Genomics landscape of 185 Streptococcus thermophilus and identification of fermentation biomarkers.		2021
33298893	Global immune characterization of HBV/HCV-related hepatocellular carcinoma identifies macrophage and T-cell subsets associated with disease progression.	Cell Discovery	2020
32024817	Genomic footprints of activated telomere maintenance mechanisms in cancer.	Nat Commun	2020
32119079	scRMD: imputation for single cell RNA-seq data via robust matrix decomposition.		2020
32398863	Whole-genome sequencing of 508 patients identifies key molecular features associated with poor prognosis in esophageal squamous cell carcinoma.	Cell Res	2020
32219377	CNV-BAC: Copy number Variation Detection in Bacterial Circular Genome.		2020
32581131	Patient-derived tumor-like cell clusters for drug testing in cancer therapy.	Sci Transl Med	2020
31227023	Somatic mutations in renal cell carcinomas from Chinese patients revealed by targeted gene panel sequencing and their associations with prognosis and PD-L1 expression.	Cancer Communications	2019
31610796	Global impact of somatic structural variation on the DNA methylome of human cancers.	Genome Biol	2019
30070719	CCL15 Recruits Suppressive Monocytes to Facilitate Immune Escape and Disease Progression in Hepatocellular Carcinoma.	Hepatology	2019
30704462	Detecting virus integration sites based on multiple related sequencing data by VirTect.	BMC Medical Genomics	2019
29327728	Diverse modes of clonal evolution in HBV-related hepatocellular carcinoma revealed by single-cell genome sequencing.	Cell Res	2018
29996110	A Pan-Cancer Compendium of Genes Deregulated by Somatic Genomic Rearrangement across More Than 1,400 Cases.	Cell Rep	2018
29551704	Spatial and temporal clonal evolution of intrahepatic cholangiocarcinoma.	Journal of Hepatology	2018
27639803	Cell Culture System for Analysis of Genetic Heterogeneity WithinÂ Hepatocellular Carcinomas and Response to Pharmacologic Agents.	Gastroenterology	2017
28548104	Genomic analysis of oesophageal squamous-cell carcinoma identifies alcohol drinking-related mutation signature and genomic alterations.	Nat Commun	2017
28528867	A Pan-Cancer Proteogenomic Atlas of PI3K/AKT/mTOR Pathway Alterations.	Cancer Cell	2017
28361688	Pysim-sv: a package for simulating structural variation data with GC-biases.	BMC Bioinformatics	2017
29036467	SVmine improves structural variation detection by integrative mining of predictions from multiple algorithms.		2017
26672766	Inferring the progression of multifocal liver cancer from spatial and temporal genomic heterogeneity.	Oncotarget	2016
27283966	A microscopic landscape of the invasive breast cancer genome.	Sci Rep	2016
27260798	Copy number analysis of whole-genome data using BIC-seq2 and its application to detection of cancer susceptibility variants.	Nucleic Acids Res	2016
26210357	Evaluation of somatic copy number estimation tools for whole-exome sequencing data.	Brief Bioinform	2016
26675727	Corrigendum: Hallmarks of pluripotency.	Nature	2016
26399828	Hallmarks of pluripotency.	Nature	2015
23663786	Diverse mechanisms of somatic structural variations in human cancer genomes.	Cell	2013
23132910	Functional genomic analysis of chromosomal aberrations in a compendium of 8000 cancer genomes.	Genome Res	2013
23074071	A survey of copy-number variation detection tools based on high-throughput sequencing data.	Curr Protoc Hum Genet	2012
23064238	Systematic identification of synergistic drug pairs targeting HIV.	Nat Biotechnol	2012
22120048	Evidence for dosage compensation between the X chromosome and autosomes in mammals.	Nat Genet	2011
22065754	Copy number variation detection in whole-genome sequencing data using the Bayesian information criterion.	Proc Natl Acad Sci U S A	2011
21179089	Comprehensive analysis of the chromatin landscape in Drosophila melanogaster.	Nature	2011
20718989	rSW-seq: algorithm for detection of copy number alterations in deep sequencing data.	BMC Bioinformatics	2010
21216738	Detecting structural variations in the human genome using next generation sequencing.	Brief Funct Genomics	2010