Author details

Full Name

Tzu-Ming Chu

Affiliation

ORCID

Career Start Year

2002

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
26109056	Comparison of RNA-seq and microarray-based models for clinical endpoint prediction.	Genome Biol	2015
24194394	Comparison of microarrays and RNA-seq for gene expression analyses of dose-response experiments.	Toxicol Sci	2014
23358191	Relative impact of incorporating pharmacokinetics on predicting in vivo hazard and mode of action from high-throughput in vitro toxicity assays.	Toxicol Sci	2013
24295562	Global transcriptome analysis of Clostridium thermocellum ATCC 27405 during growth on dilute acid pretreated Populus and switchgrass.	Biotechnol Biofuels	2013
22543276	A comprehensive statistical analysis of predicting in vivo hazard using high-throughput in vitro screening.	Toxicol Sci	2012
21631915	Kernel density weighted loess normalization improves the performance of detection within asymmetrical data.	BMC Bioinformatics	2011
20676064	Consistency of predictive signature genes and classifiers generated using different microarray platforms.	Pharmacogenomics J	2010
20676074	The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models.	Nat Biotechnol	2010
20676066	Genomic indicators in the blood predict drug-induced liver injury.	Pharmacogenomics J	2010
19776212	Use of short-term transcriptional profiles to assess the long-term cancer-related safety of environmental and industrial chemicals.	Toxicol Sci	2009
18793455	The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies.	BMC Bioinformatics	2008
18650403	Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.	Plant Physiol	2008
17669735	Transcript profiling of a conifer pathosystem: response of Pinus sylvestris root tissues to pathogen (Heterobasidion annosum) invasion.	Tree Physiol	2007
16964227	Evaluation of external RNA controls for the assessment of microarray performance.	Nat Biotechnol	2006
17217515	Comparison of transcriptional responses in liver tissue and primary hepatocyte cell cultures after exposure to hexahydro-1, 3, 5-trinitro-1, 3, 5-triazine.	BMC Bioinformatics	2006
17157261	Receptor-selective coactivators as tools to define the biology of specific receptor-coactivator pairs.	Mol Cell	2006
16574741	Linking ligand-induced alterations in androgen receptor structure to differential gene expression: a first step in the rational design of selective androgen receptor modulators.	Mol Endocrinol	2006
16964229	The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements.	Nat Biotechnol	2006
16964228	Performance comparison of one-color and two-color platforms within the MicroArray Quality Control (MAQC) project.	Nat Biotechnol	2006
14990445	Comparison of Li-Wong and loglinear mixed models for the statistical analysis of oligonucleotide arrays.	Bioinformatics	2004
15294754	Variation in transcript abundance during somatic embryogenesis in gymnosperms.	Tree Physiol	2004
16646801	A mixed model approach to identify yeast transcriptional regulatory motifs via microarray experiments.	Stat Appl Genet Mol Biol	2004
15033594	Cross-site comparison of gene expression data reveals high similarity.	Environ Health Perspect	2004
14573485	Mixed-model reanalysis of primate data suggests tissue and species biases in oligonucleotide-based gene expression profiles.	Genetics	2003
11867082	A systematic statistical linear modeling approach to oligonucleotide array experiments.	Math Biosci	2002