Author details

Full Name

Robbert J C Slebos

Affiliation

ORCID

Career Start Year

1987

Papers

118

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37750589	Immune landscape in molecular subtypes of human papillomavirus-negative head and neck cancer.		2024
37292462	An AI-Ready Multiplex Staining Dataset for Reproducible and Accurate Characterization of Tumor Immune Microenvironment.		2023
37841230	An AI-Ready Multiplex Staining Dataset for Reproducible and Accurate Characterization of Tumor Immune Microenvironment.		2023
37377902	EGFR Inhibition by Cetuximab Modulates Hypoxia and IFN Response Genes in Head and Neck Squamous Cell Carcinoma.		2023
37495577	Virtual alignment of pathology image series for multi-gigapixel whole slide images.		2023
36108657	Combined nivolumab and ipilimumab with or without stereotactic body radiation therapy for advanced Merkel cell carcinoma: a randomised, open label, phase 2 trial.	Lancet	2022
34470812	Correction: Effects of Tobacco Smoking On the Tumor Immune Microenvironment in Head and Neck Squamous Cell Carcinoma.	Clin Cancer Res	2021
33378592	Effects of checkpoint kinase 1 inhibition by prexasertib on the tumor immune microenvironment of head and neck squamous cell carcinoma.	Mol Carcinog	2021
32689909	Molecular Determinants of Thyroid Nodules with Indeterminate Cytology and <i>RAS</i> Mutations.	Thyroid	2021
33341450	Quantitative analysis of CDX2 protein expression improves its clinical utility as a prognostic biomarker in stage II and III colon cancer.	Eur J Cancer	2021
34568816	Deep Learning of Histopathology Images at the Single Cell Level.	Frontiers in Artificial Intelligence	2021
32869651	Histoecology: Applying Ecological Principles and Approaches to Describe and Predict Tumor Ecosystem Dynamics Across Space and Time.	Cancer Control	2020
32194915	Long noncoding RNA, , as a prognostic biomarker in head and neck squamous cell carcinoma (HNSCC).	American Journal of Translational Research (discontinued)	2020
31848186	Effects of Tobacco Smoking on the Tumor Immune Microenvironment in Head and Neck Squamous Cell Carcinoma.	Clin Cancer Res	2020
31896815	Accelerated instability testing reveals quantitative mass spectrometry overcomes specimen storage limitations associated with PD-L1 immunohistochemistry.	Laboratory Investigation	2020
31395880	Proteogenomic landscape of squamous cell lung cancer.	Nat Commun	2019
30920604	Human Papillomavirus Genotype Detection in Oral Gargle Samples Among Men With Newly Diagnosed Oropharyngeal Squamous Cell Carcinoma.	JAMA Otolaryngology - Head and Neck Surgery	2019
31266446	lncDIFF: a novel quasi-likelihood method for differential expression analysis of non-coding RNA.	BMC Genomics	2019
28195392	Relative protein quantification and accessible biology in lung tumor proteomes from four LC-MS/MS discovery platforms.	Proteomics	2017
28731711	Identification of Proteomic Features To Distinguish Benign Pulmonary Nodules from Lung Adenocarcinoma.	J Proteome Res	2017
28625833	Colorectal Cancer Cell Line Proteomes Are Representative of Primary Tumors and Predict Drug Sensitivity.	Gastroenterology	2017
27882349	The airway epithelium undergoes metabolic reprogramming in individuals at high risk for lung cancer.	JCI Insight	2016
27340238	Oncogenic KRAS and BRAF Drive Metabolic Reprogramming in Colorectal Cancer.	Mol Cell Proteomics	2016
26657539	proBAMsuite, a Bioinformatics Framework for Genome-Based Representation and Analysis of Proteomics Data.	Mol Cell Proteomics	2016
26631509	An Analysis of the Sensitivity of Proteogenomic Mapping of Somatic Mutations and Novel Splicing Events in Cancer.	Mol Cell Proteomics	2016
26110578	Phenotype-Driven Plasma Biobanking Strategies and Methods.	J Pers Med	2015
25670172	Phosphotyrosine signaling analysis in human tumors is confounded by systemic ischemia-driven artifacts and intra-specimen heterogeneity.	Cancer Res	2015
26217491	Corrigendum: Proteomic analysis of colon and rectal carcinoma using standard and customized databases.	Sci Data	2015
25043054	Proteogenomic characterization of human colon and rectal cancer.	Nature	2014
24247723	Proteogenomic analysis reveals unanticipated adaptations of colorectal tumor cells to deficiencies in DNA mismatch repair.	Cancer Res	2014
25081901	A 3'-UTR KRAS-variant is associated with cisplatin resistance in patients with recurrent and/or metastatic head and neck squamous cell carcinoma.	Ann Oncol	2014
23550052	Integrative omics analysis reveals the importance and scope of translational repression in microRNA-mediated regulation.	Mol Cell Proteomics	2013
22733545	Proteomic analysis of oropharyngeal carcinomas reveals novel HPV-associated biological pathways.	Int J Cancer	2013
24224610	Comparison of protein immunoprecipitation-multiple reaction monitoring with ELISA for assay of biomarker candidates in plasma.	Journal of Proteome Research	2013
22056752	Analysis of microsatellite mutations in buccal cells from a case-control study for lung cancer.	Cancer Epidemiology	2012
22301387	Global stability of plasma proteomes for mass spectrometry-based analyses.	Mol Cell Proteomics	2012
22563532	A Reporter System for Translational Readthrough of Stop Codons in Human Cells.	FEBS Open Bio	2012
22761400	In-depth proteomic analysis of nonsmall cell lung cancer to discover molecular targets and candidate biomarkers.	Mol Cell Proteomics	2012
24451767	Application of genomic and proteomic technologies in biomarker discovery.	Am Soc Clin Oncol Educ Book	2012
23086695	Nuclear epidermal growth factor receptor and p16 expression in head and neck squamous cell carcinoma.	Laryngoscope	2012
21766301	Phase 2 trial of oxaliplatin and pemetrexed as an induction regimen in locally advanced head and neck cancer.	Cancer	2012
22103967	Protein identification using customized protein sequence databases derived from RNA-Seq data.	J Proteome Res	2012
22103262	Proteomic consequences of a single gene mutation in a colorectal cancer model.	J Proteome Res	2012
22225880	Glucose-independent glutamine metabolism via TCA cycling for proliferation and survival in B cells.	Cell Metab	2012
21357624	Methods for peptide and protein quantitation by liquid chromatography-multiple reaction monitoring mass spectrometry.	Mol Cell Proteomics	2011
21389108	A bioinformatics workflow for variant peptide detection in shotgun proteomics.	Mol Cell Proteomics	2011
20586475	Comparative shotgun proteomics using spectral count data and quasi-likelihood modeling.	J Proteome Res	2010
20731415	Cysteinyl peptide capture for shotgun proteomics: global assessment of chemoselective fractionation.	Journal of Proteome Research	2010
20677825	Depletion of abundant plasma proteins and limitations of plasma proteomics.	Journal of Proteome Research	2010
20856931	Regulation of heparin-binding EGF-like growth factor by miR-212 and acquired cetuximab-resistance in head and neck squamous cell carcinoma.	PLoS One	2010