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Author Details

Judith Klein-Seetharaman
School of Molecular Sciences & College of Health Solutions, Arizona State University
1999
138
46
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36909953Gobind's last graduate student.Biophys Rev2023
37548694Inflammation and the pathological progression of Alzheimer's disease are associated with low circulating choline levels.Acta Neuropathol2023
37214864Low circulating choline, a modifiable dietary factor, is associated with the pathological progression and metabolome dysfunction in Alzheimer's disease.bioRxiv2023
36943854High-frequency imagery to capture coral tissue (Montipora capricornis) response to environmental stress, a pilot study.PLoS One2023
34907529Structure-based survey of ligand binding in the human insulin receptor.Br J Pharmacol2022
35388085Identification of allosteric fingerprints of alpha-synuclein aggregates in matrix metalloprotease-1 and substrate-specific virtual screening with single molecule insights.Sci Rep2022
36097278Evaluation of fluorescence-based viability stains in cells dissociated from scleractinian coral Pocillopora damicornis.Sci Rep2022
34667532Similarity of the non-amyloid-β component and C-terminal tail of monomeric and tetrameric alpha-synuclein with 14-3-3 sigma.Comput Struct Biotechnol J2021
33490665A method of purifying alpha-synuclein in <i>E. coli</i> without chromatography.Heliyon2021
33584609Cephalosporins Interfere With Quorum Sensing and Improve the Ability of <i>Caenorhabditis elegans</i> to Survive <i>Pseudomonas aeruginosa</i> Infection.Front Microbiol2021
33691030Bioinformatics of corals: Investigating heterogeneous omics data from coral holobionts for insight into reef health and resillience.Pac Symp Biocomput2021
33691013Protein sequence models for prediction and comparative analysis of the SARS-CoV-2 -human interactome.Pac Symp Biocomput2021
33833260Digital image processing to detect subtle motion in stony coral.Sci Rep2021
34966926Interpretable network propagation with application to expanding the repertoire of human proteins that interact with SARS-CoV-2.Gigascience2021
32121233Angiotensin Converting Enzyme (ACE): A Marker for Personalized Feedback on Dieting.Nutrients2020
33244162Activity-dependent interdomain dynamics of matrix metalloprotease-1 on fibrin.Sci Rep2020
32727888Insights into the Mechanism of Action of Highly Diluted Biologics.J Immunol2020
32781523Lemon Extract Reduces Angiotensin Converting Enzyme (ACE) Expression and Activity and Increases Insulin Sensitivity and Lipolysis in Mouse Adipocytes.Nutrients2020
32585130Allosteric Communications between Domains Modulate the Activity of Matrix Metalloprotease-1.Biophys J2020
30582615Structural and Functional Consequences of the Weak Binding of Chlorin e6 to Bovine Rhodopsin.Photochem Photobiol2019
31697785Correction: Comparison of the molecular properties of retinitis pigmentosa P23H and N15S amino acid replacements in rhodopsin.PLoS One2019
31100078Comparison of the molecular properties of retinitis pigmentosa P23H and N15S amino acid replacements in rhodopsin.PLoS One2019
31071327Characterisation of denatured states of sensory rhodopsin II by solution-state NMR.J Mol Biol2019
30913239Antimicrobial biopolymer formation from sodium alginate and algae extract using aminoglycosides.PLoS One2019
31080628Towards personalised molecular feedback for weight loss.BMC Obes2019
29317202Structural characterization of cardiolipin-driven activation of cytochrome c into a peroxidase and membrane perturbation.Biochim Biophys Acta Biomembr2018
30098339Characterization of Denatured States and Reversible Unfolding of Sensory Rhodopsin II.J Mol Biol2018
27498292Known unknowns of cardiolipin signaling: The best is yet to come.Biochim Biophys Acta Mol Cell Biol Lipids2017
28128642Multitask Matrix Completion for Learning Protein Interactions Across Diseases.J Comput Biol2017
28476537Structure and dynamics of the insulin receptor: implications for receptor activation and drug discovery.Drug Discov Today2017
29242535Lipid bodies containing oxidatively truncated lipids block antigen cross-presentation by dendritic cells in cancer.Nat Commun2017
29312953Chlorophyll-Derivative Modulation of Rhodopsin Signaling Properties through Evolutionarily Conserved Interaction Pathways.Front Mol Biosci2017
27842066Oxidized arachidonic and adrenic PEs navigate cells to ferroptosis.Nat Chem Biol2017
26697918Mitochondrial Redox Opto-Lipidomics Reveals Mono-Oxygenated Cardiolipins as Pro-Apoptotic Death Signals.ACS Chem Biol2016
27849063Vibrational resonance, allostery, and activation in rhodopsin-like G protein-coupled receptors.Sci Rep2016
25231795Mitochondrial NM23-H4/NDPK-D: a bifunctional nanoswitch for bioenergetics and lipid signaling.Naunyn Schmiedebergs Arch Pharmacol2015
26300339Cardiolipin Interactions with Proteins.Biophys J2015
26396268Dichotomous roles for externalized cardiolipin in extracellular signaling: Promotion of phagocytosis and attenuation of innate immunity.Sci Signal2015
26609809The brown adipocyte protein CIDEA promotes lipid droplet fusion via a phosphatidic acid-binding amphipathic helix.Elife2015
25699028Techniques for transferring host-pathogen protein interactions knowledge to new tasks.Front Microbiol2015
25674082Comparing human-Salmonella with plant-Salmonella protein-protein interaction predictions.Front Microbiol2015
25592592Refining literature curated protein interactions using expert opinions.Pac Symp Biocomput2015
25566681Cardiolipin signaling mechanisms: collapse of asymmetry and oxidation.Antioxid Redox Signal2015
24378240X-ray structure, thermodynamics, elastic properties and MD simulations of cardiolipin/dimyristoylphosphatidylcholine mixed membranes.Chem Phys Lipids2014
25278024Structural re-arrangement and peroxidase activation of cytochrome c by anionic analogues of vitamin E, tocopherol succinate and tocopherol phosphate.J Biol Chem2014
25268658Differential dynamics of extracellular and cytoplasmic domains in denatured States of rhodopsin.Biochemistry2014
25110833Molecular speciation and dynamics of oxidized triacylglycerols in lipid droplets: Mass spectrometry and coarse-grained simulations.Free Radic Biol Med2014
25132964Early integration of the individual student in academic activities: a novel classroom concept for graduate education in molecular biophysics and structural biology.BMC Biophys2014
24848241A mitochondrial pathway for biosynthesis of lipid mediators.Nat Chem2014
24554775Oxidized lipids block antigen cross-presentation by dendritic cells in cancer.J Immunol2014
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Collaborators

Valerian E Kagan
Center for Free Radical and Antioxidant Health, University of Pittsburgh
Co-authored papers 26
Yanjun Qi
University of Virginiagrid.27755.32
Co-authored papers 11
Ziv Bar-Joseph
Carnegie Mellon University
Co-authored papers 7
Ivet Bahar
Laufer Center for Physical and Quantitative Biology, Stony Brook University
Co-authored papers 6
Daniel Nietlispach
University of Cambridge
Co-authored papers 4
Simon C Watkins
Center for Molecular Imaging, University of Pittsburgh School of Medicine
Co-authored papers 3
Wendy Winslow
Co-authored papers 2
Lenore J Cowen
Tufts University, 177 College Avenue
Co-authored papers 2
Zhongming Zhao
Center for Precision Health, The University of Texas Health Science Center at Houston
Co-authored papers 2
Baldo Oliva
Universitat Pompeu Fabra
Co-authored papers 2
Jennifer R Grandis
University of California san francisco
Co-authored papers 2
Tanusya M Murali
Yong Loo Lin School of Medicine, National University of Singapore
Co-authored papers 2
Timothy R Hughes
University of Toronto
Co-authored papers 1
Alexander P Golovanov
The University of Manchester
Co-authored papers 1
Dong Xu
University of Missouri
Co-authored papers 1
David A Case
Rutgers University
Co-authored papers 1
Oliver F Lange
Center for Integrated Protein Science, Technische Universitat Munchen
Co-authored papers 1
Gordon C K Roberts
Leicester Institute of Structural and Chemical Biology, University of Leicester
Co-authored papers 1
Josep Rizo
University of Texas Southwestern Medical Center
Co-authored papers 1
Mike P Williamson
The University of Sheffield
Co-authored papers 1
Lu-Yun Lian
Institute of Systems, The University of Liverpool
Co-authored papers 1
Igor L Barsukov
Institute of Integrative Biology, University of Liverpool
Co-authored papers 1
David E Shaw
Columbia University
Co-authored papers 1
Ad Bax
National Institutes of Health
Co-authored papers 1
Patrick C A van der Wel
Zernike Institute for Advanced Materials, University of Groningen
Co-authored papers 1
David Middleton
Co-authored papers 1
Ioannis Vakonakis
University of Oxford
Co-authored papers 1
Simon Kasif
Boston University
Co-authored papers 1
Thomas A Frenkiel
The Medical Research Council Biomedical NMR Centre, The Francis Crick Institute
Co-authored papers 1
Sara Mostafavi
University of British Columbia and BC Children's Hospital
Co-authored papers 1
Release 1.2