Skip to Main Content

Author Details

Vardhman K Rakyan
The Blizard Institute, Queen Mary University of London
2000
63
42
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37436062Hemin availability induces coordinated DNA methylation and gene expression changes in <i>Porphyromonas gingivalis</i>.mSystems2023
34818986An integrative epi-transcriptomic approach identifies the human cartilage chitinase 3-like protein 2 (<i>CHI3L2)</i> as a potential mediator of B12 deficiency in adipocytes.Epigenetics2022
36097184A stochastic basis for metabolic phenotypes.Nat Metab2022
35164830Genetic variation at mouse and human ribosomal DNA influences associated epigenetic states.Genome Biol2022
34675201Comparative epigenetic analysis of tumour initiating cells and syngeneic EPSC-derived neural stem cells in glioblastoma.Nat Commun2021
32126024DNA methylation clocks as a predictor for ageing and age estimation in naked mole-rats, <i>Heterocephalus glaber</i>.Aging (Albany NY)2020
33048947The DNA methylome of human sperm is distinct from blood with little evidence for tissue-consistent obesity associations.PLoS Genet2020
30462145BulkVis: a graphical viewer for Oxford nanopore bulk FAST5 files.Bioinformatics2019
31767039DNA methylation aging clocks: challenges and recommendations.Genome Biol2019
28836271Roadmap for investigating epigenome deregulation and environmental origins of cancer.Int J Cancer2018
29412141Integration of human pancreatic islet genomic data refines regulatory mechanisms at Type 2 Diabetes susceptibility loci.Elife2018
29720174Early life diet conditions the molecular response to post-weaning protein restriction in the mouse.BMC Biol2018
29452591Ageing-associated DNA methylation dynamics are a molecular readout of lifespan variation among mammalian species.Genome Biol2018
28833606DNA methylation profiles between airway epithelium and proxy tissues in children.Acta Paediatr2017
27386920Early-life nutrition modulates the epigenetic state of specific rDNA genetic variants in mice.Science2016
26376367Assessing DNA methylation in the developing human intestinal epithelium: potential link to inflammatory bowel disease.Mucosal Immunol2016
27851974eFORGE: A Tool for Identifying Cell Type-Specific Signal in Epigenomic Data.Cell Rep2016
27898055Increased DNA methylation variability in type 1 diabetes across three immune effector cell types.Nat Commun2016
27716309Correlation of an epigenetic mitotic clock with cancer risk.Genome Biol2016
25496377Novel DNA methylation profiles associated with key gene regulation and transcription pathways in blood and placenta of growth-restricted neonates.Epigenetics2015
26381124The senescent methylome and its relationship with cancer, ageing and germline genetic variation in humans.Genome Biol2015
26669438A donor-specific epigenetic classifier for acute graft-versus-host disease severity in hematopoietic stem cell transplantation.Genome Med2015
25888192Sexually dimorphic gene expression emerges with embryonic genome activation and is dynamic throughout development.BMC Genomics2015
25634562Maternal gestational diabetes is associated with genome-wide DNA methylation variation in placenta and cord blood of exposed offspring.Hum Mol Genet2015
25634226The human blood DNA methylome displays a highly distinctive profile compared with other somatic tissues.Epigenetics2015
25031617Correcting for cell-type composition bias in epigenome-wide association studies.Genome Med2014
23538714Buccals are likely to be a more informative surrogate tissue than blood for epigenome-wide association studies.Epigenetics2013
24330312Marmal-aid--a database for Infinium HumanMethylation450.BMC Bioinformatics2013
24071862Integrated analysis of genome-wide genetic and epigenetic association data for identification of disease mechanisms.Epigenetics2013
23880534The promise and challenges of blood spot methylomics.Epigenetics2013
23697936Transgenerational inheritance of non-genetically determined phenotypes.Biochem Soc Trans2013
23706135Inactive or moderately active human promoters are enriched for inter-individual epialleles.Genome Biol2013
22398613BLUEPRINT to decode the epigenetic signature written in blood.Nat Biotechnol2012
22919074Guthrie card methylomics identifies temporally stable epialleles that are present at birth in humans.Genome Res2012
22826509A functional methylome map of ulcerative colitis.Genome Res2012
22902559Protection against de novo methylation is instrumental in maintaining parent-of-origin methylation inherited from the gametes.Mol Cell2012
22479372Genome wide analysis of acute myeloid leukemia reveal leukemia specific methylome and subtype specific hypomethylation of repeats.PLoS One2012
20839222The hunt for the epiallele.Environ Mol Mutagen2011
21940836Comparative methylomics reveals gene-body H3K36me3 in Drosophila predicts DNA methylation and CpG landscapes in other invertebrates.Genome Res2011
21980303Identification of type 1 diabetes-associated DNA methylation variable positions that precede disease diagnosis.PLoS Genet2011
21747404Epigenome-wide association studies for common human diseases.Nat Rev Genet2011
21324880Comparative methylome analysis of benign and malignant peripheral nerve sheath tumors.Genome Res2011
20071334DNA methylation-mediated down-regulation of DNA methyltransferase-1 (DNMT1) is coincident with, but not essential for, global hypomethylation in human placenta.J Biol Chem2010
21124985Integrated genetic and epigenetic analysis identifies haplotype-specific methylation in the FTO type 2 diabetes and obesity susceptibility locus.PLoS One2010
20687937Genome-wide DNA methylation analysis for diabetic nephropathy in type 1 diabetes mellitus.BMC Med Genomics2010
20219945Human aging-associated DNA hypermethylation occurs preferentially at bivalent chromatin domains.Genome Res2010
19237542Placenta-specific methylation of the vitamin D 24-hydroxylase gene: implications for feedback autoregulation of active vitamin D levels at the fetomaternal interface.J Biol Chem2009
19349366Sites of differential DNA methylation between placenta and peripheral blood: molecular markers for noninvasive prenatal diagnosis of aneuploidies.Am J Pathol2009
18325624The methylome: approaches for global DNA methylation profiling.Trends Genet2008
18849521Reconfiguration of genomic anchors upon transcriptional activation of the human major histocompatibility complex.Genome Res2008
  • 1 - 50 of 63

Recommended Authors

Eilis Hannon
University of Exeter Medical School, University of Exeter.
Career Start Year 2013
Number of shared co-authors 11
Johanna Klughammer
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences
Career Start Year 2013
Number of shared co-authors 11
Juozas Gordevi??ius
Epigenetic Clock Development Foundation
Career Start Year 2012
Number of shared co-authors 3
Lucas A Salas
Geisel School of Medicine, Dartmouth College
Career Start Year 2012
Number of shared co-authors 6
Yupeng He
Salk Institute for Biological Studies
Career Start Year 2012
Number of shared co-authors 1
Wanding Zhou
University of Pennsylvania
Career Start Year 2011
Number of shared co-authors 4
Pavlo Lutsik
Catholic University (KU) Leuven
Career Start Year 2010
Number of shared co-authors 4
Peter F Hickey
The Walter and Eliza Hall Institute of Medical Research
Career Start Year 2010
Number of shared co-authors 0
Joseph R Nery
The Salk Institute for Biological Studies
Career Start Year 2009
Number of shared co-authors 1
David U Gorkin
Center for Epigenomics, University of California San Diego
Career Start Year 2009
Number of shared co-authors 1
Gabriel Oh
The Campbell Family Mental Health Research Institute
Career Start Year 2008
Number of shared co-authors 2
Nongluk Plongthongkum
King Mongkut's University of Technology Thonburi
Career Start Year 2007
Number of shared co-authors 1
Chol-Hee Jung
University of Melbourne
Career Start Year 2005
Number of shared co-authors 1
Kun Zhang
China Pharmaceutical University
Career Start Year 2005
Number of shared co-authors 1
David L Corcoran
The University of North Carolina at Chapel Hill
Career Start Year 2005
Number of shared co-authors 10
Kasper D Hansen
Johns Hopkins University School of Medicine
Career Start Year 2004
Number of shared co-authors 3
Duncan Sproul
Institute of Genetics and Cancer, University of Edinburgh
Career Start Year 2004
Number of shared co-authors 5
Zachary D Smith
University of Maryland Baltimore County
Career Start Year 2004
Number of shared co-authors 3
Ting Wang
Washington University School of Medicine
Career Start Year 2001
Number of shared co-authors 5
Tarjei S Mikkelsen
Harvard University, USA Broad Institute, USA Harvard Stem Cell Institute
Career Start Year 2001
Number of shared co-authors 11
Benjamin P Berman
Institute for Medical Research Israel-Canada, The Hebrew University of Jerusalem
Career Start Year 2000
Number of shared co-authors 2
Martin Hirst
University of British Columbia
Career Start Year 1998
Number of shared co-authors 10
Bing Ren
Center for Epigenomics, University of California San Diego
Career Start Year 1995
Number of shared co-authors 12
Devin Absher
Kaiser Permanente Research Bank
Career Start Year 1994
Number of shared co-authors 14
Michael S Kobor
University of British Columbia
Career Start Year 1993
Number of shared co-authors 5
Arturas Petronis
The Campbell Family Mental Health Research Institute
Career Start Year 1993
Number of shared co-authors 2
Holger Heyn
Barcelona Institute of Science and Technology, Spain Universitat Pompeu Fabra
Career Start Year 1988
Number of shared co-authors 10
Dieter Weichenhan
German Cancer Research Center (DKFZ)
Career Start Year 1988
Number of shared co-authors 0
Peter W Laird
Van Andel Institute
Career Start Year 1985
Number of shared co-authors 6
Richard R Meehan
Institute of Genetics and Molecular Medicine, University of Edinburgh
Career Start Year 1984
Number of shared co-authors 3

Collaborators

Stephan Beck
UCL Cancer Institute, University College London
Co-authored papers 26
Robert Lowe
The Blizard Institute Queen Mary University of London London UK.
Co-authored papers 19
Thomas A Down
Co-authored papers 16
Andrew E Teschendorff
UCL Cancer Institute, University College London
Co-authored papers 9
Richard David Leslie
Blizard Institute, Barts and Royal London Medical School
Co-authored papers 7
Huriya Beyan
Blizard Institute, University of London
Co-authored papers 6
Christopher G Bell
William Harvey Research Institute, Queen Mary University of London
Co-authored papers 5
Eleni M Tomazou
St. Anna Children's Cancer Research Institute (CCRI)
Co-authored papers 4
Paul Flicek
European Bioinformatics Institute
Co-authored papers 4
Graham A Hitman
Co-authored papers 4
Bernhard O Boehm
Co-authored papers 4
Mohammed I Hawa
Blizard Institute, Queen Mary University of London
Co-authored papers 4
Dirk S Paul
Co-authored papers 4
Ewan Birney
European Bioinformatics Institute
Co-authored papers 3
Ivo Gut
Spain Universitat de Barcelona (UB)
Co-authored papers 3
Willem H Ouwehand
University of Cambridge
Co-authored papers 3
Elia Stupka
Center for Omics Sciences, IRCCS San Raffaele Scientific Institute
Co-authored papers 2
Heike Fiegler
Co-authored papers 2
Leonard C Schalkwyk
University of Essex
Co-authored papers 2
Jean-Pierre J Issa
Fels Cancer Institute for Personalized Medicine, Temple University School of Medicine
Co-authored papers 2
John C Marioni
Cancer Research UK Cambridge Institute, University of Cambridge
Co-authored papers 2
Wolf Reik
The Babraham Institute
Co-authored papers 2
Mattia Frontini
Co-authored papers 2
Hendrik G Stunnenberg
Co-authored papers 2
Stefan Gr??f
Heart and Lung Research Institute, University of Cambridge
Co-authored papers 2
Reiner Siebert
Co-authored papers 2
Guillaume Bourque
Institute for the Advanced Study of Human Biology (ASHBi), Kyoto University
Co-authored papers 2
Nicole Soranzo
Wellcome Sanger Institute
Co-authored papers 2
Simon Tavar??
Irving Institute for Cancer Dynamics, Columbia University
Co-authored papers 2
Panos Deloukas
William Harvey Research Institute, Queen Mary University of London
Co-authored papers 2
Release 1.2