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Author Details

Romy Chakraborty
Lawrence Berkeley National Laboratory
2001
65
29
PMIDPaper TitleJournal TitlePublished Year
37272792Distinct Depth-Discrete Profiles of Microbial Communities and Geochemical Insights in the Subsurface Critical Zone.Appl Environ Microbiol2023
37280433Fine scale sampling reveals early differentiation of rhizosphere microbiome from bulk soil in young Brachypodium plant roots.ISME Commun2023
35107332Genomic Features and Pervasive Negative Selection in <i>Rhodanobacter</i> Strains Isolated from Nitrate and Heavy Metal Contaminated Aquifer.Microbiol Spectr2022
37938300Genotype to ecotype in niche environments: adaptation of Arthrobacter to carbon availability and environmental conditions.ISME Commun2022
35737807Development of a Markerless Deletion Mutagenesis System in Nitrate-Reducing Bacterium Rhodanobacter denitrificans.Appl Environ Microbiol2022
35602028Characterizing Natural Organic Matter Transformations by Microbial Communities in Terrestrial Subsurface Ecosystems: A Critical Review of Analytical Techniques and Challenges.Front Microbiol2022
35694313A Defined Medium for Cultivation and Exometabolite Profiling of Soil Bacteria.Front Microbiol2022
34184913Ecogenomics of Groundwater Phages Suggests Niche Differentiation Linked to Specific Environmental Tolerance.mSystems2021
33649553Systematic discovery of pseudomonad genetic factors involved in sensitivity to tailocins.ISME J2021
33841353Specialized Plant Growth Chamber Designs to Study Complex Rhizosphere Interactions.Front Microbiol2021
33555060Significance of lysogeny for the metabolism of Desulfovibrio spp. strains isolated from aquatic environments of Georgia.J Appl Microbiol2021
34908429Comparative Genomics Reveals Insights into Induction of Violacein Biosynthesis and Adaptive Evolution in <i>Janthinobacterium</i>.Microbiol Spectr2021
34867848Plant Growth Promotion Diversity in Switchgrass-Colonizing, Diazotrophic Endophytes.Front Microbiol2021
34248891Measurement of Volatile Compounds for Real-Time Analysis of Soil Microbial Metabolic Response to Simulated Snowmelt.Front Microbiol2021
34248859Microbial Phosphorus Mobilization Strategies Across a Natural Nutrient Limitation Gradient and Evidence for Linkage With Iron Solubilization Traits.Front Microbiol2021
32417512Characterization of subsurface media from locations up- and down-gradient of a uranium-contaminated aquifer.Chemosphere2020
33193240Characterization of a Metal-Resistant <i>Bacillus</i> Strain With a High Molybdate Affinity ModA From Contaminated Sediments at the Oak Ridge Reservation.Front Microbiol2020
33391234Culturing of "Unculturable" Subsurface Microbes: Natural Organic Carbon Source Fuels the Growth of Diverse and Distinct Bacteria From Groundwater.Front Microbiol2020
33013800Emerging Trends in Biological Treatment of Wastewater From Unconventional Oil and Gas Extraction.Front Microbiol2020
32986713In-field bioreactors demonstrate dynamic shifts in microbial communities in response to geochemical perturbations.PLoS One2020
30523276The selective pressures on the microbial community in a metal-contaminated aquifer.ISME J2019
31235780Probing the active fraction of soil microbiomes using BONCAT-FACS.Nat Commun2019
30889537Enhanced crude oil depletion by constructed bacterial consortium comprising bioemulsifier producer and petroleum hydrocarbon degraders.Bioresour Technol2019
30723459Resource Concentration Modulates the Fate of Dissimilated Nitrogen in a Dual-Pathway Actinobacterium.Front Microbiol2019
29769716Mutant phenotypes for thousands of bacterial genes of unknown function.Nature2018
29937762Microbial Interactions With Dissolved Organic Matter Drive Carbon Dynamics and Community Succession.Front Microbiol2018
30265315Impact of hydrologic boundaries on microbial planktonic and biofilm communities in shallow terrestrial subsurface environments.FEMS Microbiol Ecol2018
29359196Magic Pools: Parallel Assessment of Transposon Delivery Vectors in Bacteria.mSystems2018
28663297Draft Genome Sequences of Two <i>Janthinobacterium</i><i>lividum</i> Strains, Isolated from Pristine Groundwater Collected from the Oak Ridge Field Research Center.Genome Announc2017
28194258Complete genome sequence of <i>Pseudomonas stutzeri</i> strain RCH2 isolated from a Hexavalent Chromium [Cr(VI)] contaminated site.Stand Genomic Sci2017
28179898Metatranscriptomic Analysis Reveals Unexpectedly Diverse Microbial Metabolism in a Biogeochemical Hot Spot in an Alluvial Aquifer.Front Microbiol2017
29312276Construction of Viable Soil Defined Media Using Quantitative Metabolomics Analysis of Soil Metabolites.Front Microbiol2017
27048805Lateral Gene Transfer in a Heavy Metal-Contaminated-Groundwater Microbial Community.mBio2016
25767232High-Quality Draft Genome Sequence of Desulfovibrio carbinoliphilus FW-101-2B, an Organic Acid-Oxidizing Sulfate-Reducing Bacterium Isolated from Uranium(VI)-Contaminated Groundwater.Genome Announc2015
26392107Exometabolite niche partitioning among sympatric soil bacteria.Nat Commun2015
26067957Draft Genome Sequence of Raoultella terrigena R1Gly, a Diazotrophic Endophyte.Genome Announc2015
25835088A Slow-Release Substrate Stimulates Groundwater Microbial Communities for Long-Term in Situ Cr(VI) Reduction.Environ Sci Technol2015
25979890Molybdenum Availability Is Key to Nitrate Removal in Contaminated Groundwater Environments.Appl Environ Microbiol2015
25977418Complete Genome Sequence of Cupriavidus basilensis 4G11, Isolated from the Oak Ridge Field Research Center Site.Genome Announc2015
24874683Complete Genome Sequence of the Subsurface, Mesophilic Sulfate-Reducing Bacterium Desulfovibrio aespoeensis Aspo-2.Genome Announc2014
24772107Assessment of the Deepwater Horizon oil spill impact on Gulf coast microbial communities.Front Microbiol2014
23580709Draft Genome Sequence for Desulfovibrio africanus Strain PCS.Genome Announc2013
24111681"Replica-extraction-transfer" nanostructure-initiator mass spectrometry imaging of acoustically printed bacteria.Anal Chem2013
23937111Succession of hydrocarbon-degrading bacteria in the aftermath of the deepwater horizon oil spill in the gulf of Mexico.Environ Sci Technol2013
22342400Systems biology approach to bioremediation.Curr Opin Biotechnol2012
23087678Microbial Response to the MC-252 Oil and Corexit 9500 in the Gulf of Mexico.Front Microbiol2012
22616650Deep-sea bacteria enriched by oil and dispersant from the Deepwater Horizon spill.Environ Microbiol2012
21755095Microfluidic fluorescence in situ hybridization and flow cytometry (μFlowFISH).Lab Chip2011
21764955PCR amplification-independent methods for detection of microbial communities by the high-density microarray PhyloChip.Appl Environ Microbiol2011
21605602Use of immunomagnetic separation for the detection of Desulfovibrio vulgaris from environmental samples.J Microbiol Methods2011
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Collaborators

Terry C Hazen
University of Tennessee
Co-authored papers 29
Adam P Arkin
Lawrence Berkeley National Laboratory
Co-authored papers 24
Adam M Deutschbauer
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Co-authored papers 15
Jizhong Zhou
Institute for Environmental Genomics, University of Oklahoma
Co-authored papers 8
Sharon Borglin
Lawrence Berkeley National Laboratory
Co-authored papers 7
Matthew W Fields
Center for Biofilm Engineering (CBE), Montana State University
Co-authored papers 7
Trent R Northen
Co-authored papers 7
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University of Tennessee
Co-authored papers 6
Michael W W Adams
University of Georgia
Co-authored papers 6
Farris L Poole
University of Georgia
Co-authored papers 5
Morgan N Price
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Co-authored papers 5
Benjamin P Bowen
Co-authored papers 4
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University of Georgia
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Kelly S Bender
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Co-authored papers 3
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Co-authored papers 3
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Paramvir S Dehal
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Pavel S Novichkov
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Jay D Keasling
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Co-authored papers 2
Aindrila Mukhopadhyay
Joint BioEnergy Institute
Co-authored papers 2
Nicole Shapiro
Co-authored papers 2
Anup K Singh
Joint BioEnergy Institute, USA Lawrence Livermore National Laboratory
Co-authored papers 2
Tanja Woyke
Co-authored papers 2
Aifen Zhou
University of Oklahoma
Co-authored papers 2
David A Stahl
University of Washington
Co-authored papers 2
Eric J Alm
Massachusetts Institute of Technology 21 Ames St. Cambridge
Co-authored papers 2
Grant M Zane
University of Missouri
Co-authored papers 2
Ye Deng
Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences
Co-authored papers 2
Release 1.2