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Author Details

Reuben Thomas
Gladstone Institute of Data Science and Biotechnology, Gladstone Institutes
2004
56
19
Nevan J Krogan (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36798286Long COVID manifests with T cell dysregulation, inflammation, and an uncoordinated adaptive immune response to SARS-CoV-2.bioRxiv2023
37863057APOE4-promoted gliosis and degeneration in tauopathy are ameliorated by pharmacological inhibition of HMGB1 release.Cell Rep2023
37957317The APOE-R136S mutation protects against APOE4-driven Tau pathology, neurodegeneration and neuroinflammation.Nat Neurosci2023
37118426Neuronal APOE4 removal protects against tau-mediated gliosis, neurodegeneration and myelin deficits.Nat Aging2023
37333294Post-acute immunological and behavioral sequelae in mice after Omicron infection.bioRxiv2023
36994838A Mesp1-dependent developmental breakpoint in transcriptional and epigenomic specification of early cardiac precursors.Development2023
35082446Brahma safeguards canalization of cardiac mesoderm differentiation.Nature2022
35649376Differential Etv2 threshold requirement for endothelial and erythropoietic development.Cell Rep2022
35421980Deep immunophenotyping reveals endometriosis is marked by dysregulation of the mononuclear phagocytic system in endometrium and peripheral blood.BMC Med2022
35938400Transcription Factor GATA4 Regulates Cell Type-Specific Splicing Through Direct Interaction With RNA in Human Induced Pluripotent Stem Cell-Derived Cardiac Progenitors.Circulation2022
35154118Deep Phenotypic Analysis of Blood and Lymphoid T and NK Cells From HIV+ Controllers and ART-Suppressed Individuals.Front Immunol2022
35182466Transcription factor protein interactomes reveal genetic determinants in heart disease.Cell2022
35061545Transient Cell Cycle Induction in Cardiomyocytes to Treat Subacute Ischemic Heart Failure.Circulation2022
33318667Microglial G<sub>i</sub>-dependent dynamics regulate brain network hyperexcitability.Nat Neurosci2021
33652063T2-based area-at-risk and edema are influenced by ischemic duration in acute myocardial infarction.Magn Reson Imaging2021
33833046Phenotypic Differences between the Alzheimer's Disease-Related hAPP-J20 Model and Heterozygous <i>Zbtb20</i> Knock-Out Mice.eNeuro2021
34671772SARS-CoV-2 spike protein induces abnormal inflammatory blood clots neutralized by fibrin immunotherapy.bioRxiv2021
34426831BMP receptor blockade overcomes extrinsic inhibition of remyelination and restores neurovascular homeostasis.Brain2021
32327684Differential Effects of the Hormonal and Copper Intrauterine Device on the Endometrial Transcriptome.Sci Rep2020
32661365Author Correction: Transcriptional profiling and therapeutic targeting of oxidative stress in neuroinflammation.Nat Immunol2020
32990219Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.Elife2020
32284594Transcriptional profiling and therapeutic targeting of oxidative stress in neuroinflammation.Nat Immunol2020
30814119Dynamic BAF chromatin remodeling complex subunit inclusion promotes temporally distinct gene expression programs in cardiogenesis.Development2019
31271750Context-Specific Transcription Factor Functions Regulate Epigenomic and Transcriptional Dynamics during Cardiac Reprogramming.Cell Stem Cell2019
30300410Identification of gene expression predictors of occupational benzene exposure.PLoS One2018
27169896Features that define the best ChIP-seq peak calling algorithms.Brief Bioinform2017
28351867Cooperative activation of cardiac transcription through myocardin bridging of paired MEF2 sites.Development2017
28676061Hemorrhage promotes inflammation and myocardial damage following acute myocardial infarction: insights from a novel preclinical model and cardiovascular magnetic resonance.J Cardiovasc Magn Reson2017
28526038Phosphorylation of tau at Y18, but not tau-fyn binding, is required for tau to modulate NMDA receptor-dependent excitotoxicity in primary neuronal culture.Mol Neurodegener2017
27028625Analysis of gene expression in mouse brain regions after exposure to 1.9 GHz radiofrequency fields.Int J Radiat Biol2016
27412823Association of lifestyle and demographic factors with estrogenic and glucocorticogenic activity in Mexican American women.Carcinogenesis2016
27091369The Next Generation of Risk Assessment Multi-Year Study-Highlights of Findings, Applications to Risk Assessment, and Future Directions.Environ Health Perspect2016
26620277Distal coronary embolization following acute myocardial infarction increases early infarct size and late left ventricular wall thinning in a porcine model.J Cardiovasc Magn Reson2015
26629706Environmental Predictors of US County Mortality Patterns on a National Basis.PLoS One2015
24786086Characterization of changes in gene expression and biochemical pathways at low levels of benzene exposure.PLoS One2014
25472674Improving power to detect changes in blood miRNA expression by accounting for sources of variability in experimental designs.Cancer Epidemiol Biomarkers Prev2014
23086841Gene expression networks.Methods Mol Biol2013
24136419Inhaled formaldehyde induces DNA-protein crosslinks and oxidative stress in bone marrow and other distant organs of exposed mice.Environ Mol Mutagen2013
23907980Global gene expression response of a population exposed to benzene: a pilot study exploring the use of RNA-sequencing technology.Environ Mol Mutagen2013
23907930Analysis of the transcriptome in molecular epidemiology studies.Environ Mol Mutagen2013
23737943Biological networks for predicting chemical hepatocarcinogenicity using gene expression data from treated mice and relevance across human and rat species.PLoS One2013
23528242Ignoring and adding errors do not improve the science.Carcinogenesis2013
23222815Low-dose metabolism of benzene in humans: science and obfuscation.Carcinogenesis2013
22235315Post-GWAS functional characterization of susceptibility variants for chronic lymphocytic leukemia.PLoS One2012
22730190Predicted toxicity of the biofuel candidate 2,5-dimethylfuran in environmental and biological systems.Environ Mol Mutagen2012
22723965Effect of chemical mutagens and carcinogens on gene expression profiles in human TK6 cells.PLoS One2012
22851955Using bioinformatic approaches to identify pathways targeted by human leukemogens.Int J Environ Res Public Health2012
21147609Global gene expression profiling of a population exposed to a range of benzene levels.Environ Health Perspect2011
21912624Genome-wide functional profiling reveals genes required for tolerance to benzene metabolites in yeast.PLoS One2011
21339091Estimating the global public health implications of electricity and coal consumption.Environ Health Perspect2011
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Collaborators

Benoit G Bruneau
Gladstone Institutes of Cardiovascular Disease, Gladstone Institutes
Co-authored papers 8
Katherine S Pollard
Gladstone Institutes
Co-authored papers 6
Deepak Srivastava
Gladstone Institutes San Francisco
Co-authored papers 5
Krishna Choudhary
Gladstone Institutes of Cardiovascular Disease, Gladstone Institutes
Co-authored papers 5
Jae K Ryu
Gladstone Institutes
Co-authored papers 5
Katerina Akassoglou
Gladstone Institute for Neurological Disease San Francisco
Co-authored papers 5
Nadia R Roan
University of California, USA Gladstone Institutes san francisco
Co-authored papers 5
Zhaoqi Yan
University of Illinois College of Medicine Rockford
Co-authored papers 5
Brian L Black
Cardiovascular Research Institute, University of California san francisco
Co-authored papers 5
Andrew S Mendiola
The University of Texas at San Antonio
Co-authored papers 4
Xiaoyu Luo
Gladstone Institutes, University of California san francisco
Co-authored papers 4
Roel Vermeulen
Co-authored papers 4
Nevan J Krogan (CM4AI)
University of California San Francisco
Co-authored papers 4
Len A Pennacchio
Lawrence Berkeley National Laboratory
Co-authored papers 3
Sanjay Mehrotra
Northwestern University Industrial Engineering and Management Sciences
Co-authored papers 3
Steven G Deeks
University of California san francisco
Co-authored papers 3
Warner C Greene
Gladstone Institute of Virology, USA University of California san francisco
Co-authored papers 3
Mark H Ellisman
National Center for Microscopy and Imaging Research, University of California
Co-authored papers 3
Casey A Gifford
Gladstone Institutes, USA Roddenberry Center for Stem Cell Biology at Gladstone
Co-authored papers 3
Scott S Zamvil
Weill Institute for Neurosciences, University of California san francisco
Co-authored papers 3
Alexander R Pico
Institute of Data Science and Biotechnology, Gladstone Institutes
Co-authored papers 3
Rosa Meza-Acevedo
Gladstone Institutes
Co-authored papers 3
Yu Huang
Gladstone Institutes San Francisco
Co-authored papers 3
Ruth H??ttenhain
Quantitative Biosciences Institute (QBI), University of California san francisco
Co-authored papers 3
Min-Gyoung Shin
Institute of Data Science and Biotechnology, Gladstone Institutes
Co-authored papers 3
Anke Meyer-Franke
Gladstone Institutes
Co-authored papers 3
Diane E Dickel
Co-authored papers 2
Lennart Mucke
Gladstone Institute of Neurological Disease, Gladstone Institutes
Co-authored papers 2
Arun Padmanabhan
Gladstone Institutes San Francisco
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Release 1.2