Author details

Full Name

Elizabeth Purdom

Affiliation

ORCID

Career Start Year

2004

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
35000239	Successional adaptive strategies revealed by correlating arbuscular mycorrhizal fungal abundance with host plant gene expression.	Molecular Ecology	2023
37961539	A Latent Activated Olfactory Stem Cell State Revealed by Single Cell Transcriptomic and Epigenomic Profiling.		2023
37398321	Visualizing scRNA-Seq Data at Population Scale with GloScope.		2023
35977472	A single-cell transcriptional gradient in human cutaneous memory TÂ cells restricts Th17/Tc17 identity.	Cell Rep Med	2022
35958578	Defining Patient-Level Molecular Heterogeneity in Psoriasis Vulgaris Based on Single-Cell Transcriptomics.	Front Immunol	2022
35427179	Classification of human chronic inflammatory skin disease based on single-cell immune profiling.	Sci Immunol	2022
35790741	Co-occurrence networks reveal more complexity than community composition in resistance and resilience of microbial communities.	Nat Commun	2022
34963480	Cobolt: integrative analysis of multimodal single-cell sequencing data.		2021
34050180	Genome-resolved metagenomics reveals role of iron metabolism in drought-induced rhizosphere microbiome dynamics.	Nat Commun	2021
33497379	mbkmeans: Fast clustering for single cell data using mini-batch k-means.	PLoS Comput Biol	2021
34868130	Cell Wall Compositions of Leaves and Roots Remain Relatively Constant Under Drought Conditions.	Frontiers in Plant Science	2021
34616066	A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex.	Nature	2021
32937591	Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia.	Science advances	2020
31911594	Fungal community assembly in drought-stressed sorghum shows stochasticity, selection, and universal ecological dynamics.	Nat Commun	2020
32176529	MethCP: Differentially Methylated Region Detection with Change Point Models.	Journal of Computational Biology	2020
31022373	Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-Seq.	Cell Syst	2019
31806758	Transcriptomic analysis of field-droughted sorghum from seedling to maturity reveals biotic and metabolic responses.	Proc Natl Acad Sci U S A	2019
30171254	Strong succession in arbuscular mycorrhizal fungal communities.	ISME Journal	2019
30543901	A20 and ABIN1 Suppression of a Keratinocyte Inflammatory Program with a Shared Single-Cell Expression Signature in Diverse Human Rashes.	J Invest Dermatol	2019
30180157	clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets.	PLoS Computational Biology	2018
30355494	Transcriptional Programming of Normal and Inflamed Human Epidermis at Single-Cell Resolution.	Cell Rep	2018
29914354	Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics.	BMC Genomics	2018
30135250	APOBEC mutation drives early-onset squamous cell carcinomas in recessive dystrophic epidermolysis bullosa.	Sci Transl Med	2018
27780810	Clustering of mRNA-Seq data based on alternative splicing patterns.	Biostatistics	2017
28868140	Bioconductor workflow for single-cell RNA sequencing: Normalization, dimensionality reduction, clustering, and lineage inference.	F1000Research	2017
28506465	Deconstructing Olfactory Stem Cell Trajectories at Single-Cell Resolution.	Cell Stem Cell	2017
28545501	Pregnancy-induced gene expression changes in vivo among women with rheumatoid arthritis: a pilot study.		2017
28753209	Drought and host selection influence bacterial community dynamics in the grass root microbiome.	ISME Journal	2017
29174333	Injury Activates Transient Olfactory Stem Cell States with Diverse Lineage Capacities.	Cell Stem Cell	2017
26286987	Phylogenetic analyses of melanoma reveal complex patterns of metastatic dissemination.	Proc Natl Acad Sci U S A	2015
25456125	Transcription restores DNA repair to heterochromatin, determining regional mutation rates in cancer genomes.	Cell Rep	2014
23497823	Determining epithelial contribution to in vivo mesenchymal tumour expression signature using species-specific microarray profiling analysis of xenografts.	Genet Res (Camb)	2013
24064421	Methods and challenges in timing chromosomal abnormalities within cancer samples.	Bioinformatics	2013
22003129	Subtype and pathway specific responses to anticancer compounds in breast cancer.	Proc Natl Acad Sci U S A	2012
23084833	A Tetrahymena Piwi bound to mature tRNA 3' fragments activates the exonuclease Xrn2 for RNA processing in the nucleus.	Molecular Cell	2012
21984974	Temporal dissection of tumorigenesis in primary cancers.	Cancer Discov	2011
21436879	Unifying gene expression measures from multiple platforms using factor analysis.	PLoS One	2011
20167110	Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments.	BMC Bioinformatics	2010
20129251	Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1.	Cancer Cell	2010
20605923	Exon-level microarray analyses identify alternative splicing programs in breast cancer.	Mol Cancer Res	2010
18573797	FIRMA: a method for detection of alternative splicing from exon array data.	Bioinformatics	2008
16407106	Molecular analysis of the bacterial microbiota in the human stomach.	Proc Natl Acad Sci U S A	2006
16646833	Error distribution for gene expression data.	Stat Appl Genet Mol Biol	2005
15831718	Diversity of the human intestinal microbial flora.	Science	2005
15150126	Microarray analysis reveals differences in gene expression of circulating CD8(+) T cells in melanoma patients and healthy donors.	Cancer Res	2004