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Author Details

Rahul Satija
Center for Genomics and Systems Biology, New York University
2006
75
49
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37231261Dictionary learning for integrative, multimodal and scalable single-cell analysis.Nat Biotechnol2024
37231261Dictionary learning for integrative, multimodal and scalable single-cell analysis.Nat Biotechnol2024
36798324CPA-Perturb-seq: Multiplexed single-cell characterization of alternative polyadenylation regulators.bioRxiv2023
37735591Multimodal single-cell datasets characterize antigen-specific CD8<sup>+</sup> T cells across SARS-CoV-2 vaccination and infection.Nat Immunol2023
37280296The technological landscape and applications of single-cell multi-omics.Nat Rev Mol Cell Biol2023
36945506Sensitive cluster-free differential expression testing.bioRxiv2023
36747786Multimodal characterization of antigen-specific CD8 <sup>+</sup> T cells across SARS-CoV-2 vaccination and infection.bioRxiv2023
36798324CPA-Perturb-seq: Multiplexed single-cell characterization of alternative polyadenylation regulators.bioRxiv2023
36536150Nanobody-tethered transposition enables multifactorial chromatin profiling at single-cell resolution.Nat Biotechnol2023
37034703Phospho-seq: Integrated, multi-modal profiling of intracellular protein dynamics in single cells.bioRxiv2023
37735591Multimodal single-cell datasets characterize antigen-specific CD8<sup>+</sup> T cells across SARS-CoV-2 vaccination and infection.Nat Immunol2023
36945506Sensitive cluster-free differential expression testing.bioRxiv2023
37280296The technological landscape and applications of single-cell multi-omics.Nat Rev Mol Cell Biol2023
37034703Phospho-seq: Integrated, multi-modal profiling of intracellular protein dynamics in single cells.bioRxiv2023
36747786Multimodal characterization of antigen-specific CD8 <sup>+</sup> T cells across SARS-CoV-2 vaccination and infection.bioRxiv2023
36536150Nanobody-tethered transposition enables multifactorial chromatin profiling at single-cell resolution.Nat Biotechnol2023
34791424Evolutionary systems biology reveals patterns of rice adaptation to drought-prone agro-ecosystems.Plant Cell2022
35419551Single nucleus multi-omics identifies human cortical cell regulatory genome diversity.Cell Genom2022
35332340Characterizing cellular heterogeneity in chromatin state with scCUT&amp;Tag-pro.Nat Biotechnol2022
35042561Comparison and evaluation of statistical error models for scRNA-seq.Genome Biol2022
34791424Evolutionary systems biology reveals patterns of rice adaptation to drought-prone agro-ecosystems.Plant Cell2022
34997233Author Correction: Single-cell chromatin state analysis with Signac.Nat Methods2022
35419551Single nucleus multi-omics identifies human cortical cell regulatory genome diversity.Cell Genom2022
35042561Comparison and evaluation of statistical error models for scRNA-seq.Genome Biol2022
35332340Characterizing cellular heterogeneity in chromatin state with scCUT&amp;Tag-pro.Nat Biotechnol2022
34997233Author Correction: Single-cell chromatin state analysis with Signac.Nat Methods2022
34083792Scalable, multimodal profiling of chromatin accessibility, gene expression and protein levels in single cells.Nat Biotechnol2021
33958784A latent subset of human hematopoietic stem cells resists regenerative stress to preserve stemness.Nat Immunol2021
34062119Integrated analysis of multimodal single-cell data.Cell2021
33649593Characterizing the molecular regulation of inhibitory immune checkpoints with multimodal single-cell screens.Nat Genet2021
34083792Scalable, multimodal profiling of chromatin accessibility, gene expression and protein levels in single cells.Nat Biotechnol2021
34725479Single-cell chromatin state analysis with Signac.Nat Methods2021
34872616geneBasis: an iterative approach for unsupervised selection of targeted gene panels from scRNA-seq.Genome Biol2021
33649593Characterizing the molecular regulation of inhibitory immune checkpoints with multimodal single-cell screens.Nat Genet2021
34872616geneBasis: an iterative approach for unsupervised selection of targeted gene panels from scRNA-seq.Genome Biol2021
34725479Single-cell chromatin state analysis with Signac.Nat Methods2021
33958784A latent subset of human hematopoietic stem cells resists regenerative stress to preserve stemness.Nat Immunol2021
34062119Integrated analysis of multimodal single-cell data.Cell2021
32615085Niche-Selective Inhibition of Pathogenic Th17 Cells by Targeting Metabolic Redundancy.Cell2020
32051590The strength and pattern of natural selection on gene expression in rice.Nature2020
32615085Niche-Selective Inhibition of Pathogenic Th17 Cells by Targeting Metabolic Redundancy.Cell2020
32051590The strength and pattern of natural selection on gene expression in rice.Nature2020
30696980Integrative single-cell analysis.Nat Rev Genet2019
31835027Toward a Common Coordinate Framework for the Human Body.Cell2019
31870423Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression.Genome Biol2019
30696980Integrative single-cell analysis.Nat Rev Genet2019
30971824The bone marrow microenvironment at single-cell resolution.Nature2019
31011186Multiplexed detection of proteins, transcriptomes, clonotypes and CRISPR perturbations in single cells.Nat Methods2019
31296938Author Correction: The bone marrow microenvironment at single-cell resolution.Nature2019
31870423Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression.Genome Biol2019
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Collaborators

Broad Institute of MIT and Harvard
Co-authored papers 24
Institute for Medical Engineering & Science, Massachusetts Institute of Technology
Co-authored papers 13
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Co-authored papers 9
Center for Computational Biology, University of California berkeley
Co-authored papers 5
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Vanderbilt-Ingram Cancer Center, Vanderbilt University
Co-authored papers 4
Cancer Research UK Cambridge Institute, University of Cambridge
Co-authored papers 4
Broad Institute of MIT and Harvard
Co-authored papers 4
Broad Institute of MIT and Harvard
Co-authored papers 4
Weizmann Institute of Medical Sciences
Co-authored papers 3
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Broad Institute of Harvard and MIT and Harvard
Co-authored papers 2
Harvard University, USA Broad Institute, USA Harvard Stem Cell Institute
Co-authored papers 2
Broad Institute of MIT and Harvard
Co-authored papers 2
Broad Institute of MIT and Harvard
Co-authored papers 2
Co-authored papers 2
Co-authored papers 2
Broad Institute of MIT and Harvard
Co-authored papers 2
Broad Institute of the Massachusetts Institute of Technology and Harvard
Co-authored papers 2
Columbia University
Co-authored papers 2
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Massachusetts Institute of Technology, USA Broad Institute
Co-authored papers 2
JiangYuan Hospital Affiliated to Jiangsu Institute of Nuclear Medicine
Co-authored papers 2
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