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Author Details

Andrea Califano
Columbia University
1993
225
70
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36993718Ras-dependent activation of BMAL2 regulates hypoxic metabolism in pancreatic cancer.bioRxiv2024
37966260Tumor Explants Elucidate a Cascade of Paracrine SHH, WNT, and VEGF Signals Driving Pancreatic Cancer Angiosuppression.Cancer Discov2024
36374194OncoLoop: A Network-Based Precision Cancer Medicine Framework.Cancer Discov2023
37502956NSD2 maintains lineage plasticity and castration-resistance in neuroendocrine prostate cancer.bioRxiv2023
37541213Tff2 defines transit-amplifying pancreatic acinar progenitors that lack regenerative potential and are protective against Kras-driven carcinogenesis.Cell Stem Cell2023
37922910Anti-PD-1 immunotherapy with androgen deprivation therapy induces robust immune infiltration in metastatic castration-sensitive prostate cancer.Cancer Cell2023
37024582Genomic and transcriptomic analysis of checkpoint blockade response in advanced non-small cell lung cancer.Nat Genet2023
37116491Systematic elucidation and pharmacological targeting of tumor-infiltrating regulatory T cell master regulators.Cancer Cell2023
37014043Editor's Note: Dual Targeting of the Akt/mTOR Signaling Pathway Inhibits Castration-Resistant Prostate Cancer in a Genetically Engineered Mouse Model.Cancer Res2023
36981431NaRnEA: An Information Theoretic Framework for Gene Set Analysis.Entropy (Basel)2023
37407562UHRF1 is a mediator of KRAS driven oncogenesis in lung adenocarcinoma.Nat Commun2023
37205498Systematic Pan-cancer Functional Inference and Validation of Hyper, Hypo and Neomorphic Mutations.bioRxiv2023
37268690Therapeutic blood-brain barrier modulation and stroke treatment by a bioengineered FZD<sub>4</sub>-selective WNT surrogate in mice.Nat Commun2023
37061969A Transcriptome-Based Precision Oncology Platform for Patient-Therapy Alignment in a Diverse Set of Treatment-Resistant Malignancies.Cancer Discov2023
36585452Network-based assessment of HDAC6 activity predicts preclinical and clinical responses to the HDAC6 inhibitor ricolinostat in breast cancer.Nat Cancer2023
36824919Network-based elucidation of colon cancer drug resistance by phosphoproteomic time-series analysis.bioRxiv2023
34728525A Phase II Study of the Efficacy and Safety of Oral Selinexor in Recurrent Glioblastoma.Clin Cancer Res2022
35843032Non-urothelial lesions of the urinary bladder A 14.5-year, single-institution review.Pathol Res Pract2022
35478225A multi-organ chip with matured tissue niches linked by vascular flow.Nat Biomed Eng2022
35854100A model for network-based identification and pharmacological targeting of aberrant, replication-permissive transcriptional programs induced by viral infection.Commun Biol2022
36195086Validation of a non-oncogene encoded vulnerability to exportin 1 inhibition in pediatric renal tumors.Med2022
36083100A Patient-to-Model-to-Patient (PMP) Cancer Drug Discovery Protocol for Identifying and Validating Therapeutic Agents Targeting Tumor Regulatory Architecture.Curr Protoc2022
35132404A Model for Network-Based Identification and Pharmacological Targeting of Aberrant, Replication-Permissive Transcriptional Programs Induced by Viral Infection.Res Sq2022
35319286Adult enteric Dclk1-positive glial and neuronal cells reveal distinct responses to acute intestinal injury.Am J Physiol Gastrointest Liver Physiol2022
34965795The best prostate biopsy sampling system-fusion and systematic biopsy: A single center experience.Urologia2022
35262677Immunostimulatory Cancer-Associated Fibroblast Subpopulations Can Predict Immunotherapy Response in Head and Neck Cancer.Clin Cancer Res2022
35106508A community challenge for a pancancer drug mechanism of action inference from perturbational profile data.Cell Rep Med2022
35167496Notch-mediated Ephrin signaling disrupts islet architecture and β cell function.JCI Insight2022
32929263Oncoprotein-specific molecular interaction maps (SigMaps) for cancer network analyses.Nat Biotechnol2021
33829464SARS-CoV-2 infection and H1N1 vaccination: does a relationship between the two factors really exist? A retrospective analysis of a territorial cohort in Ferrara, Italy.Eur Rev Med Pharmacol Sci2021
33637604Longitudinal Immune Profiling Reveals Unique Myeloid and T-cell Phenotypes Associated with Spontaneous Immunoediting in a Prostate Tumor Model.Cancer Immunol Res2021
33930309Promotion of cholangiocarcinoma growth by diverse cancer-associated fibroblast subpopulations.Cancer Cell2021
34907913BACH2 inhibition reverses β cell failure in type 2 diabetes models.J Clin Invest2021
34753775HER3 Is an Actionable Target in Advanced Prostate Cancer.Cancer Res2021
34019793Single-cell protein activity analysis identifies recurrence-associated renal tumor macrophages.Cell2021
34129825Promotion of cholangiocarcinoma growth by diverse cancer-associated fibroblast subpopulations.Cancer Cell2021
34323164A 2:1 randomized, open-label, phase II study of selinexor vs. physician's choice in older patients with relapsed or refractory acute myeloid leukemia.Leuk Lymphoma2021
34341990Fimepinostat (CUDC-907) in patients with relapsed/refractory diffuse large B cell and high-grade B-cell lymphoma: report of a phase 2 trial and exploratory biomarker analyses.Br J Haematol2021
34169393Phase I/II trial of ruxolitinib in combination with trastuzumab in metastatic HER2 positive breast cancer.Breast Cancer Res Treat2021
34108263Targeting the T-Cell Lymphoma Epigenome Induces Cell Death, Cancer Testes Antigens, Immune-Modulatory Signaling Pathways.Mol Cancer Ther2021
33434495A modular master regulator landscape controls cancer transcriptional identity.Cell2021
33451982A CRISPR/Cas9-Engineered <i>ARID1A</i>-Deficient Human Gastric Cancer Organoid Model Reveals Essential and Nonessential Modes of Oncogenic Transformation.Cancer Discov2021
32945242Massive intra-abdominal recurrence after robotic-assisted radical cystectomy: A case report and critical appraisal of literature.Urologia2021
32511361The Host Cell ViroCheckpoint: Identification and Pharmacologic Targeting of Novel Mechanistic Determinants of Coronavirus-Mediated Hijacked Cell States.bioRxiv2020
33490923Prioritizing transcriptional factors in gene regulatory networks with PageRank.iScience2020
31959337A meta-analysis of the accuracy of a neuroendocrine tumor mRNA genomic biomarker (NETest) in blood.Ann Oncol2020
31852831Genomic and Phenotypic Characterization of a Broad Panel of Patient-Derived Xenografts Reflects the Diversity of Glioblastoma.Clin Cancer Res2020
33333029SECAT: Quantifying Protein Complex Dynamics across Cell States by Network-Centric Analysis of SEC-SWATH-MS Profiles.Cell Syst2020
33354662<i>N</i>-quinoline-benzenesulfonamide derivatives exert potent anti-lymphoma effect by targeting NF-κB.iScience2020
33296649The Master Regulator Protein BAZ2B Can Reprogram Human Hematopoietic Lineage-Committed Progenitors into a Multipotent State.Cell Rep2020
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Co-authored papers 8
Sylvester Comprehensive Cancer Center, Miller School of Medicine, University of Miami
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Children's Hospital of Philadelphia
Co-authored papers 7
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Co-authored papers 6
Columbia University Irving Medical Center
Co-authored papers 6
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Division of Gastroenterology and Irvine Cancer Research Center, Columbia University
Co-authored papers 5
Columbia University
Co-authored papers 5
Herbert Irving Cancer Research Center, Columbia University Medical Center
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