Author details

Full Name

Alper Kucukural

Affiliation

ORCID

Career Start Year

2010

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37205335	Up-regulation of cholesterol synthesis pathways and limited neurodegeneration in a knock-in mutant mouse model of ALS.		2023
37089874	Functional Annotation Routines Used by ABRF Bioinformatics Core Facilities - Observations, Comparisons, and Considerations.	J Biomol Tech	2023
35322228	AAV-delivered suppressor tRNA overcomes a nonsense mutation in mice.	Nature	2022
34529935	Dietary suppression of MHC class II expression in intestinal epithelial cells enhances intestinal tumorigenesis.	Cell Stem Cell	2021
32822913	Reduced Neurog3 Gene Dosage Shifts Enteroendocrine Progenitor Towards Goblet Cell Lineage in the Mouse Intestine.	Cellular and Molecular Gastroenterology and Hepatology	2021
32858321	A Translational Model for Venous Thromboembolism: MicroRNA Expression in Hibernating Black Bears.	J Surg Res	2021
34702762	Type I IFN-Driven Immune Cell Dysregulation in Rat Autoimmune Diabetes.	ImmunoHorizons	2021
32831172	An improved zebrafish transcriptome annotation for sensitive and comprehensive detection of cell type-specific genes.	eLife	2020
31914605	Recovery of viable endocrine-specific cells and transcriptomes from human pancreatic islet-engrafted mice.	FASEB J	2020
31900453	Evolutionarily conserved pachytene piRNA loci are highly divergent among modern humans.	Nat Ecol Evol	2020
32066947	HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.	Nat Immunol	2020
32306927	DolphinNext: a distributed data processing platform for high throughput genomics.	BMC Genomics	2020
32065070	Genomic Characterization of Endothelial Enhancers Reveals a Multifunctional Role for NR2F2 in Regulation of Arteriovenous Gene Expression.	Circulation Research	2020
32382253	Bioinformatics Core Survey Highlights the Challenges Facing Data Analysis Facilities.	J Biomol Tech	2020
32729827	An atlas of cell types in the mouse epididymis and vas deferens.	Elife	2020
30987660	CRISPR-SONIC: targeted somatic oncogene knock-in enables rapid in vivo cancer modeling.	Genome Medicine	2019
30611200	DEBrowser: interactive differential expression analysis and visualization tool for count data.	BMC Genomics	2019
31420514	Diverse repertoire of human adipocyte subtypes develops from transcriptionally distinct mesenchymal progenitor cells.	Proceedings of the National Academy of Sciences of the United States of America	2019
30833470	HLA Class II Antigen Processing and Presentation Pathway Components Demonstrated by Transcriptome and Protein Analyses of Islet Î²-Cells From Donors With Type 1 Diabetes.		2019
29454939	Comparative Analysis of Immune Cells Reveals a Conserved Regulatory Lexicon.	Cell Syst	2018
28506212	GUIDEseq: a bioconductor package to analyze GUIDE-Seq datasets for CRISPR-Cas nucleases.	BMC Genomics	2017
27814506	Ebola Virus Glycoprotein with Increased Infectivity Dominated the 2013-2016 Epidemic.	Cell	2016
26969789	Comparison of RNA isolation and associated methods for extracellular RNA detection by high-throughput quantitative polymerase chain reaction.	Anal Biochem	2016
26721685	Biogenesis and function of tRNA fragments during sperm maturation and fertilization in mammals.	Science	2016
26940969	Platelet functional and transcriptional changes induced by intralipid infusion.	Thromb Haemost	2016
26702833	Genetic and Epigenetic Variation, but Not Diet, Shape the Sperm Methylome.	Dev Cell	2015
25931473	Novel Observations From Next-Generation RNA Sequencing of Highly Purified Human Adult and Fetal Islet Cell Subsets.		2015
25730492	Simultaneous generation of many RNA-seq libraries in a single reaction.	Nat Methods	2015
24336223	Staufen1 senses overall transcript secondary structure to regulate translation.	Nature Structural and Molecular Biology	2014
23929032	ASPeak: an abundance sensitive peak detection algorithm for RIP-Seq.		2013
23084401	The cellular EJC interactome reveals higher-order mRNP structure and an EJC-SR protein nexus.	Cell	2012
30360293	The Cellular EJC Interactome Reveals Higher-Order mRNP Structure and an EJC-SR Protein Nexus.	Cell	2012
21051541	Identification of neuronal RNA targets of TDP-43-containing ribonucleoprotein complexes.	J Biol Chem	2011
20360767	I-TASSER: a unified platform for automated protein structure and function prediction.	Nat Protoc	2010
21197085	Generation and Analysis of Expressed Sequence Tags from Olea europaea L.	Comparative and Functional Genomics	2010